(Q29028436)

English

Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions

scientific article (publication date: 9 December 2006)

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scholarly article

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Application of the Character Compatibility Approach to Generalized Molecular Sequence Data: Branching Order of the Proteobacterial Subdivisions (English)

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DOI.org query endpoint

https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

author name string

Radhey S. Gupta

1

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

Peter H. A. Sneath

2

1 reference

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

language of work or name

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publication date

9 December 2006

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

Journal of Molecular Evolution

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

64

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

1

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

90-100

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https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

Prokaryotic evolution in light of gene transfer

1 reference

https://api.crossref.org/works/10.1007%2FS00239-006-0082-2

21 January 2018

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

1 reference

https://api.crossref.org/works/10.1007%2FS00239-006-0082-2

21 January 2018

Signature proteins that are distinctive of alpha proteobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationships among photosynthetic bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein Signatures Distinctive of Alpha Proteobacteria and Its Subgroups and a Model for α –Proteobacterial Evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lateral and oblique gene transfer

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

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A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Criteria for optimising phylogenetic trees and the problem of determining the root of a tree

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

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inferred from PubMed ID database lookup

The last common bilaterian ancestor

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Highways of gene sharing in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Empirical and hierarchical Bayesian estimation of ancestral states.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Critical issues in bacterial phylogeny

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The shape of supertrees to come: tree shape related properties of fourteen supertree methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenomics and the reconstruction of the tree of life

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining phyla: morphological and molecular clues to metazoan evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic analysis of the 90 kD heat shock family of protein sequences and an examination of the relationship among animals, plants, and fungi species

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene arrangements and phylogeny in the class Proteobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales)

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Weighted genome trees: refinements and applications

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

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The RDP-II (Ribosomal Database Project).

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple sequence alignment with Clustal X

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring and testing hypotheses of cladistic character dependence by using character compatibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The branching order and phylogenetic placement of species from completed bacterial genomes, based on conserved indels found in various proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary trees from DNA sequences: A maximum likelihood approach

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dichotomy of major bacterial phyla inferred from gene arrangement comparisons.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genetic core of the universal ancestor

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The winds of (evolutionary) change: breathing new life into microbiology

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The RecA protein as a model molecule for molecular systematic studies of bacteria: comparison of trees of RecAs and 16S rRNAs from the same species

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Universal trees based on large combined protein sequence data sets.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

1 reference

https://pubmed.ncbi.nlm.nih.gov/17160641

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-006-0082-2

1 reference

DOI.org query endpoint

https://doi.org/10.1007%2FS00239-006-0082-2

25 March 2017

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