(Q28247594)

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

21 January 2018

1 reference

Phylogenomics: intersection of evolution and genomics

21 January 2018

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Rare genomic changes as a tool for phylogenetics

21 January 2018

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Ancient phylogenetic relationships

21 January 2018

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Phylogeny estimation: traditional and Bayesian approaches

21 January 2018

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The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes

21 January 2018

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The origin of red algae and the evolution of chloroplasts.

21 January 2018

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A kingdom-level phylogeny of eukaryotes based on combined protein data

21 January 2018

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Parallel adaptive radiations in two major clades of placental mammals

21 January 2018

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Molecular phylogenetics and the origins of placental mammals

21 January 2018

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The evolutionary position of nematodes

21 January 2018

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The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

21 January 2018

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From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

21 January 2018

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Genome-scale approaches to resolving incongruence in molecular phylogenies

21 January 2018

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Phylogenomics of eukaryotes: impact of missing data on large alignments

21 January 2018

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Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis

21 January 2018

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Prospects for building the tree of life from large sequence databases

21 January 2018

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Species sampling has a major impact on phylogenetic inference

21 January 2018

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Is it better to add taxa or characters to a difficult phylogenetic problem?

21 January 2018

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Is sparse taxon sampling a problem for phylogenetic inference?

21 January 2018

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Taxon sampling, bioinformatics, and phylogenomics

21 January 2018

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Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling

21 January 2018

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Obtaining maximal concatenated phylogenetic data sets from large sequence databases

21 January 2018

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Missing data, incomplete taxa, and phylogenetic accuracy

21 January 2018

1 reference

The (Super)Tree of Life: Procedures, Problems, and Prospects

21 January 2018

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Combining Trees as a Way of Combining Data Sets for Phylogenetic Inference, and the Desirability of Combining Gene Trees

21 January 2018

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Phylogenetic inference based on matrix representation of trees

21 January 2018

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The evolution of supertrees.

21 January 2018

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Molecular and morphological supertrees for eutherian (placental) mammals

21 January 2018

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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history

21 January 2018

1 reference

Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia.

21 January 2018

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Building Supertrees: An Empirical Assessment Using the Grass Family (Poaceae)

21 January 2018

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Universal trees based on large combined protein sequence data sets.

21 January 2018

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Eubacterial phylogeny based on translational apparatus proteins

21 January 2018

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On the best evolutionary rate for phylogenetic analysis.

21 January 2018

1 reference

Genome trees and the tree of life

21 January 2018

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Genome phylogeny based on gene content

21 January 2018

1 reference

Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores

21 January 2018

1 reference

SHOT: a web server for the construction of genome phylogenies

21 January 2018

1 reference

The consistent phylogenetic signal in genome trees revealed by reducing the impact of noise.

21 January 2018

1 reference

Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels

21 January 2018

1 reference

Genome trees constructed using five different approaches suggest new major bacterial clades

21 January 2018

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Whole genome-based phylogenetic analysis of free-living microorganisms

21 January 2018

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Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

21 January 2018

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Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction

21 January 2018

1 reference

Phylogenetic trees based on gene content

21 January 2018

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Gene order comparisons for phylogenetic inference: evolution of the mitochondrial genome

21 January 2018

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The closest BLAST hit is often not the nearest neighbor.

21 January 2018

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Horizontal gene transfer and phylogenetics

21 January 2018

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Distinguishing Homologous from Analogous Proteins

21 January 2018

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A phylogenomic approach to microbial evolution

21 January 2018

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Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

21 January 2018

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A genomic schism in birds revealed by phylogenetic analysis of DNA strings

21 January 2018

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Evolutionary implications of microbial genome tetranucleotide frequency biases

21 January 2018

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Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approach.

21 January 2018

1 reference

Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whales

21 January 2018

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Protein sequence signatures support the African clade of mammals

21 January 2018

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Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates

21 January 2018

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Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions

21 January 2018

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Rooting the eukaryote tree by using a derived gene fusion

21 January 2018

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21 January 2018

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Frequent intron loss in the white gene: a cautionary tale for phylogeneticists.

21 January 2018

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Phylogenetic assessment of introns and SINEs within the Y chromosome using the cat family felidae as a species tree

21 January 2018

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Resolution of the early placental mammal radiation using Bayesian phylogenetics

21 January 2018

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A new phylogenetic marker, apolipoprotein B, provides compelling evidence for eutherian relationships

21 January 2018

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Congruent Mammalian Trees from Mitochondrial and Nuclear Genes Using Bayesian Methods

21 January 2018

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Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

21 January 2018

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Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny

21 January 2018

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Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.

21 January 2018

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Phylogeny of seed plants based on evidence from eight genes

21 January 2018

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The root of the angiosperms revisited

21 January 2018

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A decade of progress in plant molecular phylogenetics

21 January 2018

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A receptor tyrosine kinase from choanoflagellates: molecular insights into early animal evolution

21 January 2018

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The Closest Unicellular Relatives of Animals

21 January 2018

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The real 'kingdoms' of eukaryotes

21 January 2018

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The ring of life provides evidence for a genome fusion origin of eukaryotes

21 January 2018

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A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

21 January 2018

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Phylogenetic classification and the universal tree

21 January 2018

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Lateral gene transfer and the nature of bacterial innovation

21 January 2018

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Phylogeny determined by protein domain content

21 January 2018

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Bayesian inference of phylogeny and its impact on evolutionary biology

21 January 2018

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Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

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Molecular phylogenetics: state-of-the-art methods for looking into the past

21 January 2018

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Confidence in evolutionary trees from biological sequence data.

21 January 2018

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Heterotachy, an important process of protein evolution

21 January 2018

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The Root of Angiosperm Phylogeny Inferred from Duplicate Phytochrome Genes

21 January 2018

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Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

21 January 2018

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The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm

21 January 2018

1 reference

Genome-scale data, angiosperm relationships, and "ending incongruence": a cautionary tale in phylogenetics

21 January 2018

1 reference

Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?

21 January 2018

1 reference

The new animal phylogeny: reliability and implications

21 January 2018

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The New View of Animal Phylogeny

21 January 2018

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Evidence for a clade of nematodes, arthropods and other moulting animals

21 January 2018

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Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species.

21 January 2018

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Microsporidia: Biology and Evolution of Highly Reduced Intracellular Parasites

21 January 2018

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Success of maximum likelihood phylogeny inference in the four-taxon case

21 January 2018

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Estimating the frequency of events that cause multiple-nucleotide changes

21 January 2018

1 reference

Protein evolution with dependence among codons due to tertiary structure.

21 January 2018

1 reference

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

21 January 2018

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Modeling compositional heterogeneity

21 January 2018

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Rate of change of concomitantly variable codons

21 January 2018

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Modeling the covarion hypothesis of nucleotide substitution.

21 January 2018

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Mathematical elegance with biochemical realism: the covarion model of molecular evolution.

21 January 2018

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Maximum-likelihood phylogenetic analysis under a covarion-like model.

21 January 2018

1 reference

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

21 January 2018

1 reference

Comment on "Hexapod origins: monophyletic or paraphyletic?".

21 January 2018

1 reference

The root of the mammalian tree inferred from whole mitochondrial genomes

21 January 2018

1 reference

A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

21 January 2018

1 reference

Genome-scale phylogeny and the detection of systematic biases

21 January 2018

1 reference

The root of the tree of life in the light of the covarion model.

21 January 2018

1 reference

Acoel Flatworms: Earliest Extant Bilaterian Metazoans, Not Members of Platyhelminthes

21 January 2018

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Archaea sister group of Bacteria? Indications from tree reconstruction artifacts in ancient phylogenies.

21 January 2018

1 reference

Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

21 January 2018

1 reference

Identifying and removing fast-evolving sites using compatibility analysis: an example from the Arthropoda

21 January 2018

1 reference

Use of whole genome sequence data to infer baculovirus phylogeny

21 January 2018

1 reference

Metagenomics: genomic analysis of microbial communities

21 January 2018

1 reference

Nothing in Biology Makes Sense except in the Light of Evolution

21 January 2018

1 reference

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

21 January 2018

1 reference

Evolutionary trees from DNA sequences: a maximum likelihood approach

21 January 2018

1 reference

Basic local alignment search tool

21 January 2018

1 reference

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 January 2018

1 reference

Maximum-Likelihood Models for Combined Analyses of Multiple Sequence Data

21 January 2018

1 reference

Combining multiple data sets in a likelihood analysis: which models are the best?

21 January 2018

1 reference

Additional support for Afrotheria and Paenungulata, the performance of mitochondrial versus nuclear genes, and the impact of data partitions with heterogeneous base composition

21 January 2018

1 reference

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

On the conservation of protein sequences in evolution

21 January 2018

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Evolution of chlorophyll and bacteriochlorophyll: the problem of invariant sites in sequence analysis

21 January 2018

1 reference

Phylogeny of eukaryotes based on ribosomal RNA: long-branch attraction and models of sequence evolution.

21 January 2018

1 reference

Covarion shifts cause a long-branch attraction artifact that unites microsporidia and archaebacteria in EF-1alpha phylogenies.

21 January 2018

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Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability.

21 January 2018

1 reference

An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data

21 January 2018

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Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

21 January 2018

1 reference

The importance of proper model assumption in bayesian phylogenetics.

21 January 2018

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How many nucleotides are required to resolve a phylogenetic problem? The use of a new statistical method applicable to available sequences

21 January 2018

1 reference

Archaeal phylogeny based on ribosomal proteins

21 January 2018

1 reference

21 January 2018

Taxon sampling revisited

1 reference

How good are deep phylogenetic trees?

21 January 2018

1 reference

Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

31 March 2020

1 reference

The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa

31 March 2020

1 reference

A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)

31 March 2020

1 reference

Resolution of a supertree/supermatrix paradox

31 March 2020

1 reference

Trees versus characters and the supertree/supermatrix "paradox"

31 March 2020

1 reference

Genome phylogenetic analysis based on extended gene contents

31 March 2020

1 reference

Gene order breakpoint evidence in animal mitochondrial phylogeny

31 March 2020

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Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates

31 March 2020

1 reference

The potential value of indels as phylogenetic markers: position of trichomonads as a case study

31 March 2020

1 reference

Confidence Limits on Phylogenies: an Approach using the Bootstrap

31 March 2020

1 reference

Should we use model-based methods for phylogenetic inference when we know that assumptions about among-site rate variation and nucleotide substitution pattern are violated?

31 March 2020

1 reference

Site interdependence attributed to tertiary structure in amino acid sequence evolution

31 March 2020

1 reference

Testing a covariotide model of DNA substitution

31 March 2020

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Archaeal phylogeny: reexamination of the phylogenetic position of Archaeoglobus fulgidus in light of certain composition-induced artifacts

31 March 2020

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRG1603

1 reference

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

1086469

1014262094

0 references

1086469

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference