(Q29036516)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

review article

1 reference

title

New tricks for modelers from the crystallography toolkit: the particle mesh Ewald algorithm and its use in nucleic acid simulations (English)

2 references

https://doi.org/10.1016%2FS0969-2126%2899%2980033-1

27 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

L Li

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

author name string

T Darden

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

L Pedersen

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

publication date

1 March 1999

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

2 references

https://doi.org/10.1016%2FS0969-2126%2899%2980033-1

27 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

volume

7

2 references

https://doi.org/10.1016%2FS0969-2126%2899%2980033-1

27 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

issue

3

2 references

https://doi.org/10.1016%2FS0969-2126%2899%2980033-1

27 March 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

page(s)

R55-60

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

Computer simulation of DNA double-helix dynamics

8 December 2019

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

A molecular dynamics simulation of double-helical B-DNA including counterions and water

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

A molecular dynamics computer simulation of an eight-base-pair DNA fragment in aqueous solution: comparison with experimental two-dimensional NMR data

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Simulations of the molecular dynamics of nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Die Berechnung optischer und elektrostatischer Gitterpotentiale

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Molecular dynamics studies of solvated polypeptides: Why the cut-off scheme does not work

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

The B-DNA dodecamer at high resolution reveals a spine of water on sodium

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Molecular Dynamics Simulations in Aqueous Solution of Triple Helices Containing d(G·C·C) Trios

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Vertical-scanning mutagenesis of a critical tryptophan in the minor groove binding track of HIV-1 reverse transcriptase. Molecular nature of polymerase-nucleic acid interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

NMR structure refinement and dynamics of the K+-[d(G3T4G3)]2 quadruplex via particle mesh Ewald molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Refinement of the NMR solution structure of the gamma-carboxyglutamic acid domain of coagulation factor IX using molecular dynamics simulation with initial Ca2+ positions determined by a genetic algorithm

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Protein-nucleic acid interactions and DNA conformation in a complex of human immunodeficiency virus type 1 reverse transcriptase with a double-stranded DNA template-primer

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Mechanism of inhibition of HIV-1 reverse transcriptase by non-nucleoside inhibitors

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 A resolution shows bent DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

A smooth particle mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0969-2126%2899%2980033-1

7 January 2021

10.1016/S0969-2126(99)80033-1

Identifiers

DOI

3 references

https://doi.org/10.1016%2FS0969-2126%2899%2980033-1

27 March 2017

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10368306%20AND%20SRC:MED&resulttype=core&format=json

8 December 2019

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017