(Q40854985)

24 September 2017

1 reference

title

Simulations of the molecular dynamics of nucleic acids (English)

1 reference

24 September 2017

Auffinger P

1

1 reference

PubMed ID

9631298

24 September 2017

Westhof E

series ordinal

2

1 reference

24 September 2017

1 April 1998

1 reference

Current Opinion in Structural Biology

24 September 2017

1 reference

24 September 2017

8

1 reference

24 September 2017

227-236

1 reference

24 September 2017

2

1 reference

Computer simulation of DNA double-helix dynamics

24 September 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Water: an integral part of nucleic acid structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Calculations of nucleic acid conformations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

H-bond stability in the tRNA(Asp) anticodon hairpin: 3 ns of multiple molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Classical electrostatics in biology and chemistry

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Modeling DNA in aqueous solutions: theoretical and computer simulation studies on the ion atmosphere of DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The statistical-thermodynamic basis for computation of binding affinities: a critical review

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Evidence for a hydroxide ion bridging two magnesium ions at the active site of the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Conformational properties of the TATA-box binding sequence of DNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Observation of an A-DNA to B-DNA transition in a nonhelical nucleic acid hairpin molecule using molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Effect of warmup protocol and sampling time on convergence of molecular dynamics simulations of a DNA dodecamer using AMBER 4.1 and particle-mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

A molecular level picture of the stabilization of A-DNA in mixed ethanol-water solutions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Hydration and solution structure of nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Hydration of the DNA bases is local

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Rules governing the orientation of the 2'-hydroxyl group in RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The role of water in protein-DNA interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Binding of the estrogen receptor to DNA. The role of waters

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Hydration and DNA recognition by homeodomains

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Structure and stability of a model pyrimidine-purine-purine DNA triple helix with a GC.T mismatch by simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Hydration effects on the duplex stability of phosphoramidate DNA-RNA oligomers

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

RNA structure comes of age.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

RNA structures and folding: from conventional to new issues in structure predictions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Role of hydration and water structure in biological and colloidal interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Supramolecular Synthons in Crystal Engineering—A New Organic Synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The C-h···o hydrogen bond: structural implications and supramolecular design

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

C-H...O hydrogen bonding in biology

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Water molecules which apparently accept no hydrogen bonds are systematically involved in C-H...O interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Hydration of C-H groups in tRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

RNA seeing double: close-packing of helices in RNA tertiary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Theoretical studies of an exceptionally stable RNA tetraloop: observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Three-dimensional structure of a hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Molecular dynamics investigations of hammerhead ribozyme RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

A Structural Basis for RNAminus signLigand Interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

RNA as a drug target: chemical, modelling, and evolutionary tools

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The binding of antibiotics to RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Structure, recognition and adaptive binding in RNA aptamer complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Aminoglycoside binding to the hammerhead ribozyme: a general model for the interaction of cationic antibiotics with RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Neomycin inhibition of the hammerhead ribozyme involves ionic interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Isoalloxazine derivatives promote photocleavage of natural RNAs at G.U base pairs embedded within helices

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

The detailed structure of tandem G.A mismatched base-pair motifs in RNA duplexes is context dependent

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

Aptamer structures from A to zeta

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

A smooth particle mesh Ewald method

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2898%2980044-4

7 January 2021

10.1016/S0959-440X(98)80044-4

Identifiers

DOI

1 reference

24 September 2017

1 reference

PubMed ID

9631298