(Q29048165)

4

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Anna Tramontano

3

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Bohdan Monastyrskyy

1

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Krzysztof Fidelis

I-TASSER: a unified platform for automated protein structure and function prediction

2

object named as

Krzysztof Fidelis

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language of work or name

English

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publication date

2011

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published in

Proteins

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volume

79 Suppl 10

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issue

S10

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page(s)

119-25

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Comparative protein modelling by satisfaction of spatial restraints

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

CASP9 target classification

6 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Improving protein structure prediction using multiple sequence-based contact predictions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Predicted residue-residue contacts can help the scoring of 3D models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

I-TASSER: fully automated protein structure prediction in CASP8

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Assessment of domain boundary predictions and the prediction of intramolecular contacts in CASP8.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Prediction of global and local quality of CASP8 models by MULTICOM series.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

SAM-T08, HMM-based protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

NNcon: improved protein contact map prediction using 2D-recursive neural networks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue-residue contacts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Predicting key long-range interaction sites by B-factors.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Using inferred residue contacts to distinguish between correct and incorrect protein models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

A comprehensive assessment of sequence-based and template-based methods for protein contact prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Template-based modeling and free modeling by I-TASSER in CASP7.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Assessment of intramolecular contact predictions for CASP7.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Improved residue contact prediction using support vector machines and a large feature set.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

A two-stage approach for improved prediction of residue contact maps.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Physically realistic homology models built with ROSETTA can be more accurate than their templates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

CASP6 assessment of contact prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Inter-residue interactions in protein folding and stability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

TOUCHSTONE II: a new approach to ab initio protein structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Exploring local and non-local interactions for protein stability by structural motif engineering.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

A neural network based predictor of residue contacts in proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Recovery of protein structure from contact maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Protein structures from distance inequalities.

3 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Modular DAG-RNN architectures for assembling coarse protein structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

MONSSTER: a method for folding globular proteins with a small number of distance restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Prediction of recursive convex hull class assignments for protein residues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Protein contact prediction using patterns of correlation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Prediction of contact maps with neural networks and correlated mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Contact prediction using mutual information and neural nets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

CASP9 results compared to those of previous CASP experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23160

Predicting contact map using radial basis function neural network with conformational energy function.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3226919

Predicting interresidue contacts using templates and pathways

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21928322

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CASP2: report on ab initio predictions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21928322