(Q29144924)

4 April 2017

title

A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver (English)

1 reference

Polymerase (RNA) III (DNA directed) polypeptide D

4 April 2017

main subject

1 reference

Polymerase (RNA) III (DNA directed) polypeptide A

GOA release 2020-03-11

1 reference

Polymerase (RNA) II (DNA directed) polypeptide B

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

Federica Gilardi

3

0 references

Nouria Hernandez

object named as

Nouria Hernandez

9

0 references

Lucas Sinclair

1 reference

ORCID Public Data File 2021

David Bernasconi

object named as

David Bernasconi

2

1 reference

ORCID Public Data File 2021

author name string

Donatella Canella

1

1 reference

4 April 2017

Gwendal LeMartelot

4

1 reference

4 April 2017

Eugenia Migliavacca

5

1 reference

4 April 2017

Viviane Praz

6

1 reference

4 April 2017

Pascal Cousin

7

1 reference

4 April 2017

Mauro Delorenzi

8

1 reference

4 April 2017

CycliX Consortium

10

1 reference

4 April 2017

publication date

1 April 2012

1 reference

4 April 2017

1 reference

4 April 2017

volume

22

1 reference

4 April 2017

issue

4

1 reference

4 April 2017

page(s)

666–680

1 reference

describes a project that uses

4 April 2017

limma

1 reference

Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3317149

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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Ro-associated Y RNAs in metazoans: evolution and diversification

6 April 2017

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Chromatin modifications and their function

6 April 2017

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 April 2017

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Novel upstream and intragenic control elements for the RNA polymerase III-dependent transcription of human 7SL RNA genes

6 April 2017

1 reference

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Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

6 April 2017

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Identification of conserved vault RNA expression elements and a non-expressed mouse vault RNA gene

6 April 2017

1 reference

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Human-mouse alignments with BLASTZ

6 April 2017

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Reconstitution of transcription from the human U6 small nuclear RNA promoter with eight recombinant polypeptides and a partially purified RNA polymerase III complex

6 April 2017

1 reference

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The largest subunit of human RNA polymerase III is closely related to the largest subunit of yeast and trypanosome RNA polymerase III

6 April 2017

1 reference

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The gene for the RNA component of the mitochondrial RNA-processing endoribonuclease is located on human chromosome 9p and on mouse chromosome 4

6 April 2017

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6 April 2017

The mammalian epigenome

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Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

7 April 2017

1 reference

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Interspersed repeats and other mementos of transposable elements in mammalian genomes

7 April 2017

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Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells

7 April 2017

1 reference

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Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes.

3 June 2018

1 reference

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Widespread occurrence of non-canonical transcription termination by human RNA polymerase III

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

3 June 2018

1 reference

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Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

3 June 2018

1 reference

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Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.

3 June 2018

1 reference

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Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells

3 June 2018

1 reference

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Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data

3 June 2018

1 reference

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Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Mapping of binding regions for the circadian regulators BMAL1 and CLOCK within the mouse Rev-erbalpha gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Multiple, dispersed human U6 small nuclear RNA genes with varied transcriptional efficiencies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

A bidirectional promoter connects the poly(ADP-ribose) polymerase 2 (PARP-2) gene to the gene for RNase P RNA. structure and expression of the mouse PARP-2 gene

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Nuclear factor 1 (NF1) affects accurate termination and multiple-round transcription by human RNA polymerase III

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

The origin of interspersed repeats in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Transcription of human 5S rRNA genes is influenced by an upstream DNA sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

BC1 RNA: transcriptional analysis of a neural cell-specific RNA polymerase III transcript

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Cloning and characterization of three new murine genes encoding short homologues of RNase P RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

A control region in the center of the 5S RNA gene directs specific initiation of transcription: II. The 3' border of the region

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

A control region in the center of the 5S RNA gene directs specific initiation of transcription: I. The 5' border of the region

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

The 5S gene internal control region is composed of three distinct sequence elements, organized as two functional domains with variable spacing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Upstream regulatory elements are necessary and sufficient for transcription of a U6 RNA gene by RNA polymerase III

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Mouse RNAase MRP RNA is encoded by a nuclear gene and contains a decamer sequence complementary to a conserved region of mitochondrial RNA substrate.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Isolation and sequencing of a genomic clone for mouse brain specific small RNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Activating-transcription-factor (ATF) regulates human 7S L RNA transcription by RNA polymerase IIIin vivoandin vitro

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Common RNA Polymerase I, II, and III Upstream Elements in Mouse 7SK Gene Locus Revealed by the Inverse Polymerase Chain Reaction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

A TBP complex essential for transcription from TATA-less but not TATA-containing RNA polymerase III promoters is part of the TFIIIB fraction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

4.5SI RNA genes and the role of their 5'-flanking sequences in the gene transcription.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Scoring pairwise genomic sequence alignments.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Nucleotide sequences of the RNA subunit of RNase P from several mammals.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Upstream sequences modulate the internal promoter of the human 7SL RNA gene

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3317149

Facilitated recycling pathway for RNA polymerase III

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22287103

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.130286.111

1 reference

1 reference

1 reference

1 reference