(Q29615054)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

David Relman

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

3

Mitchell L Sogin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

author name string

Sue Huse

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

17 January 2020

language of work or name

1 reference

30 April 2017

publication date

1 November 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

volume

6

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

issue

11

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

e280

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

17 January 2020

copyright license

start time

18 November 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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30 April 2017

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30 April 2017

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30 April 2017

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The gut microbiota as an environmental factor that regulates fat storage

30 April 2017

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Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis

30 April 2017

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Microbial-gut interactions in health and disease. Antibiotic-associated diarrhoea

30 April 2017

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Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon

30 April 2017

1 reference

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30 April 2017

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30 April 2017

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30 April 2017

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30 April 2017

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30 April 2017

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30 April 2017

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Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers

30 April 2017

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3 June 2018

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3 June 2018

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3 June 2018

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Microbial population structures in the deep marine biosphere

3 June 2018

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3 June 2018

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Interactions and competition within the microbial community of the human colon: links between diet and health.

3 June 2018

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3 June 2018

1 reference

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New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras

3 June 2018

1 reference

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Could peripartum antibiotics have delayed health consequences for the infant?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Two routes of metabolic cross-feeding between Bifidobacterium adolescentis and butyrate-producing anaerobes from the human gut.

3 June 2018

1 reference

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Does antibiotic exposure during infancy lead to development of asthma?: a systematic review and metaanalysis

3 June 2018

1 reference

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Enteric flora in health and disease

3 June 2018

1 reference

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The 'microflora hypothesis' of allergic diseases

3 June 2018

1 reference

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Probiotics to prevent urinary tract infections: the rationale and evidence

3 June 2018

1 reference

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3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Resilience of the dominant human fecal microbiota upon short-course antibiotic challenge

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Mucosal immunity and allergic responses: lack of regulation and/or lack of microbial stimulation?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

The role of bacterial interference in otitis, sinusitis and tonsillitis

3 June 2018

1 reference

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Mechanisms of resistance to quinolones

3 June 2018

1 reference

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Gut microorganisms, mammalian metabolism and personalized health care

3 June 2018

1 reference

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Monitoring of antibiotic-induced alterations in the human intestinal microflora and detection of probiotic strains by use of terminal restriction fragment length polymorphism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Lactate-utilizing bacteria, isolated from human feces, that produce butyrate as a major fermentation product

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Molecular microbial ecology: land of the one-eyed king

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Bacterial contributions to mammalian gut development

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Molecular ecological analysis of the gastrointestinal microbiota: a review.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Colonic bacterial flora: changing understandings in the molecular age.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Oxalobacter formigenes and its role in oxalate metabolism in the human gut.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Genotypic and phenotypic studies of murine intestinal lactobacilli: species differences in mice with and without colitis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Adhesion of probiotic strains to the intestinal mucosa and interaction with pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Gastrointestinal disorders and the critically ill. Clostridium difficile infection and pseudomembranous colitis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Fecal microbial diversity in a strict vegetarian as determined by molecular analysis and cultivation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Effect of antimicrobial agents on the ecological balance of human microflora

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Counting the uncountable: statistical approaches to estimating microbial diversity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prosthecobacter

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Estimating terrestrial biodiversity through extrapolation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Estimating population size for capture-recapture data when capture probabilities vary by time and individual animal

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Restored fitness leads to long-term persistence of resistant Bacteroides strains in the human intestine

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Effect of antibiotic therapy on human fecal microbiota and the relation to the development of Clostridium difficile

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Partitioning diversity into independent alpha and beta components.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Microbiological effects of consuming a synbiotic containing Bifidobacterium bifidum, Bifidobacterium lactis, and oligofructose in elderly persons, determined by real-time polymerase chain reaction and counting of viable bacteria.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Long-term persistence of resistant Enterococcus species after antibiotics to eradicate Helicobacter pylori

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Lactobacillus acidophilus, Bifidobacterium lactis and Lactobacillus F19 prevent antibiotic-associated ecological disturbances of Bacteroides fragilis in the intestine

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Use of denaturing gradient gel electrophoresis for analysis of the stool microbiota of hospitalized patients

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Ecological effects of linezolid versus amoxicillin/clavulanic acid on the normal intestinal microflora

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2586385

Clostridium difficile colonization in healthy adults: transient colonization and correlation with enterococcal colonization

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/19018661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Incidence of Bilophila wadsworthia in appendiceal, peritoneal and fecal samples from children

1 reference

https://pubmed.ncbi.nlm.nih.gov/19018661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Why do African Americans get more colon cancer than Native Africans?

1 reference

https://pubmed.ncbi.nlm.nih.gov/19018661

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.0060280

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19018661%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=19018661

30 April 2017