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Protein structure prediction using Rosetta
scientific article (publication date: 2004)
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instance of
scholarly article
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title
Protein structure prediction using Rosetta
(English)
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
main subject
protein structure prediction
0 references
protein structure
0 references
author name string
Rohl CA
series ordinal
1
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
Strauss CE
series ordinal
2
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
Misura KM
series ordinal
3
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
Baker D
series ordinal
4
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
language of work or name
English
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
publication date
2004
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
published in
Methods in Enzymology
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
volume
383
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
page(s)
66-93
1 reference
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
cites work
Rosetta in CASP4: progress in ab initio protein structure prediction
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assessment of novel fold targets in CASP4: predictions of three-dimensional structures, secondary structures, and interresidue contacts.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Functional inferences from blind ab initio protein structure predictions.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Enhanced functional annotation of protein sequences via the use of structural descriptors
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De Novo Prediction of Three-dimensional Structures for Major Protein Families
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De novo protein structure determination using sparse NMR data.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
De novo determination of protein backbone structure from residual dipolar couplings using Rosetta
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Accurate computer-based design of a new backbone conformation in the second turn of protein L
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Design of a Novel Globular Protein Fold with Atomic-Level Accuracy
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Accurate bond and angle parameters for X-ray protein structure refinement
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Bayesian statistical analysis of protein side‐chain rotamer preferences
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Native protein sequences are close to optimal for their structures
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Effective energy function for proteins in solution
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Efficient minimization of angle-dependent potentials for polypeptides in internal coordinates
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Simulation of activation free energies in molecular systems
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Protein secondary structure prediction based on position-specific scoring matrices
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
What is the value added by human intervention in protein structure prediction?
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Monte Carlo-minimization approach to the multiple-minima problem in protein folding
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Prospects for ab initio protein structural genomics.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Automated prediction of CASP-5 structures using the Robetta server.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1016%2FS0076-6879%2804%2983004-0
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.
1 reference
stated in
COCI
retrieved
9 October 2024
reference URL
https://opencitations.net/index/api/v1/citations/10.1002/PROT.10552
Identifiers
DOI
10.1016/S0076-6879(04)83004-0
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
626504
DBLP publication ID
books/el/04/RohlSMB04
0 references
OpenCitations bibliographic resource ID
626504
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
626504
PubMed publication ID
15063647
2 references
stated in
PubMed
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=15063647
retrieved
30 April 2017
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
626504
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