(Q47614219)

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An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

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scholarly article

1 reference

Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. (English)

1 reference

Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

protein structure prediction

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protein structure

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3

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

object named as

Tanja Kortemme

1

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author name string

Alexandre V Morozov

2

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

language of work or name

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publication date

1 February 2003

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

Journal of Molecular Biology

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

326

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

1239-1259

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

4

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Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

Hydrogen bonding in globular proteins

1 reference

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The atomic structure of protein-protein recognition sites

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Do salt bridges stabilize proteins? A continuum electrostatic analysis.

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Polar group burial contributes more to protein stability than nonpolar group burial

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Satisfying hydrogen bonding potential in proteins

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Are buried salt bridges important for protein stability and conformational specificity?

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Free energy determinants of secondary structure formation: I. alpha-Helices

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Protein stabilization by removal of unsatisfied polar groups: computational approaches and experimental tests

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A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

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Free energy determinants of tertiary structure and the evaluation of protein models.

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Directionality of Hydrogen Bonds to Sulfur and Oxygen

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Hydrogen bond stereochemistry in protein structure and function

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Hydrogen bonding in globular proteins

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An improved hydrogen bond potential: impact on medium resolution protein structures.

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

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The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.

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Simulation of activation free energies in molecular systems

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Hydrogen Bond Energetics: A Simulation and Statistical Analysis ofN-Methyl Acetamide (NMA), Water, and Human Lysozyme†

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DREIDING: a generic force field for molecular simulations

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Automated design of the surface positions of protein helices

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Review: protein design--where we were, where we are, where we're going.

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Designing potential energy functions for protein folding

1 reference

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7 January 2021

Ab initio protein folding.

1 reference

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7 January 2021

Predictive docking of protein-protein and protein-DNA complexes.

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7 January 2021

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

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Hydrogen bonding in high-resolution protein structures: a new method to assess NMR protein geometry

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Principles that govern the folding of protein chains

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Bayesian statistical analysis of protein side-chain rotamer preferences

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7 January 2021

Kinetic studies of protein-protein interactions

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Electrostatic aspects of protein-protein interactions.

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Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family

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Rosetta in CASP4: progress in ab initio protein structure prediction

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Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

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Native protein sequences are close to optimal for their structures

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A simple physical model for binding energy hot spots in protein-protein complexes

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Factors affecting the ability of energy functions to discriminate correct from incorrect folds

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Discrimination of near-native protein structures from misfolded models by empirical free energy functions

1 reference

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Free energies of protein decoys provide insight into determinants of protein stability

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Protein-protein docking predictions for the CAPRI experiment

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Shape complementarity at protein/protein interfaces

1 reference

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Protein docking along smooth association pathways

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Design, activity, and structure of a highly specific artificial endonuclease

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Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

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AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

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Effective energy function for proteins in solution

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De novo protein design: fully automated sequence selection

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Hydroxyl hydrogen conformations in trypsin determined by the neutron diffraction solvent difference map method: relative importance of steric and electrostatic factors in defining hydrogen-bonding geometries

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An improved protein decoy set for testing energy functions for protein structure prediction.

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Evaluation of Models of Electrostatic Interactions in Proteins

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Hydrogen-bond geometry in organic crystals

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10.1016/S0022-2836(03)00021-4

1 reference

Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

release_ar3xurspwrbldogxi7rvcqigna

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24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

4 February 2018

http://europepmc.org/abstract/MED/12589766

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