(Q29618274)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2432595%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

title

Improved free-energy parameters for predictions of RNA duplex stability (English)

2 references

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30 April 2017

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28 September 2019

2

1 reference

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28 September 2019

author name string

S M Freier

1

1 reference

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28 September 2019

J A Jaeger

3

1 reference

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28 September 2019

N Sugimoto

4

1 reference

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28 September 2019

M H Caruthers

5

1 reference

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28 September 2019

T Neilson

6

1 reference

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28 September 2019

D H Turner

7

1 reference

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28 September 2019

language of work or name

1 reference

30 April 2017

publication date

1 December 1986

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2432595%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

28 September 2019

published in

2 references

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30 April 2017

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28 September 2019

volume

83

2 references

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30 April 2017

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28 September 2019

page(s)

9373-9377

1 reference

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28 September 2019

issue

24

2 references

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30 April 2017

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

28 September 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Improved Estimation of Secondary Structure in Ribonucleic Acids

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA.

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Some simple computational methods to improve the folding of large RNAs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Computer-aided prediction of RNA secondary structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Conformational Transitions in Viroids and Virusoids: Comparison of Results from Energy Minimization Algorithm and from Experimental Data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Thermodynamic Studies of RNA Stability

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Helix formation by d(TA) oligomers. II. Analysis of the helix-coli transitions of linear and circular oligomers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Estimation of Secondary Structure in Ribonucleic Acids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Theory of oligonucleotide stabilization. I. The effect of single-strand stacking.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Stability of ribonucleic acid double-stranded helices

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Solvent effects on the stability of A7U7p.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Calorimetric determination of the heat capacity changes associated with the conformational transitions of polyriboadenylic acid and polyribouridylic acid

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

The 3′ terminus of 16S rRNA: secondary structure and interaction with ribosomal protein S1

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Globin mRNA Sequences: Analysis of Base Pairing and Evolutionary Implications

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Improved free energies for G.C base-pairs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

Free energy of imperfect nucleic acid helices. I. The bulge defect

20 June 2018

1 reference

12 December 2020

The Conformational Transitions in Yeast tRNAPhe as Studied with tRNAPhe Fragments

1 reference

12 December 2020

Conformational transitions in tRNAAsp(brewer's yeast). Thermodynamic, kinetic, and enzymic measurements on oligonucleotide fragments and the intact molecule

1 reference

12 December 2020

Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide

1 reference

12 December 2020

The effects of base sequence and dangling bases on the stability of short ribonucleic acid duplexes

1 reference

12 December 2020

DNA and RNA oligomer thermodynamics: the effect of mismatched bases on double-helix stability

1 reference

12 December 2020

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

12 December 2020

Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes

1 reference

12 December 2020

Free energy contributions of G.U and other terminal mismatches to helix stability

1 reference

12 December 2020

Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids

1 reference

12 December 2020

Energetics of internal GU mismatches in ribooligonucleotide helixes

1 reference

12 December 2020

Heat of the reaction forming the three-stranded poly (A + 2U) complex

1 reference

12 December 2020

Relaxation kinetics of dimer formation by self complementary oligonucleotides

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.83.24.9373

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2432595%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

ADS bibcode

1986PNAS...83.9373F

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=2432595

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:2432595%20AND%20SRC:MED&resulttype=core&format=json

28 September 2019

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=2432595

30 April 2017