(Q29620199)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

title

The Phenix software for automated determination of macromolecular structures (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

0 references

1 reference

0 references

1

1 reference

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9 February 2020

Li-Wei Hung

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Robert Oeffner

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Randy Read

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Thomas C. Terwilliger

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

Jane Shelby Richardson

16

object named as

Jane S Richardson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

4

Vincent B Chen

1 reference

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9 February 2020

6

Jeffrey J Headd

1 reference

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9 February 2020

9

Gary J Kapral

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

12

Nigel W Moriarty

1 reference

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9 February 2020

2

Pavel V Afonine

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

15

David C Richardson

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

3

Gábor Bunkóczi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

8

Swati Jain

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

11

Airlie J McCoy

1 reference

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9 February 2020

18

Peter H Zwart

1 reference

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9 February 2020

5

Nathaniel Echols

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

author name string

Ralf W Grosse Kunstleve

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

9 February 2020

language of work or name

1 reference

30 April 2017

publication date

29 July 2011

1 reference

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

9 February 2020

number of pages

13

0 references

2 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

volume

55

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

issue

1

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

page(s)

94-106

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

A new generation of crystallographic validation tools for the protein data bank

9 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Protein structure determination by exhaustive search of Protein Data Bank derived databases

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Super-resolution biomolecular crystallography with low-resolution data

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

PHENIX: a comprehensive Python-based system for macromolecular structure solution

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

MolProbity: all-atom structure validation for macromolecular crystallography

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

electronic Ligand Builder and Optimization Workbench (eLBOW): a tool for ligand coordinate and restraint generation

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Phasercrystallographic software

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

30 April 2017

A short history of SHELX

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

BALBES: a molecular-replacement pipeline

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

High-resolution structure prediction and the crystallographic phase problem

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated structure solution with autoSHARP

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

The Buccaneer software for automated model building. 1. Tracing protein chains

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Auto-rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Refinement of severely incomplete structures with maximum likelihood in BUSTER-TNT

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Coot: model-building tools for molecular graphics

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Macromolecular TLS refinement in REFMAC at moderate resolutions

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Substructure search procedures for macromolecular structures

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated main-chain model building by template matching and iterative fragment extension

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated structure solution, density modification and model building

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Pushing the boundaries of molecular replacement with maximum likelihood

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

The penultimate rotamer library

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

30 April 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated MAD and MIR structure solution

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Torsion angle dynamics: reduced variable conformational sampling enhances crystallographic structure refinement

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Refined crystal structure of Streptomyces griseus trypsin at 1.7 A resolution

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

WHAT IF: a molecular modeling and drug design program

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

A robust bulk-solvent correction and anisotropic scaling procedure

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Improvement of molecular-replacement models with Sculptor

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Experimental phasing: best practice and pitfalls

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automatic multiple-zone rigid-body refinement with a large convergence radius

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Autofix for backward-fit sidechains: using MolProbity and real-space refinement to put misfits in their place

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Ligand identification using electron-density map correlations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated ligand fitting by core-fragment fitting and extension into density

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

A test of enhancing model accuracy in high-throughput crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

CRANK: new methods for automated macromolecular crystal structure solution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Improving macromolecular atomic models at moderate resolution by automated iterative model building, statistical density modification and refinement

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated side-chain model building and sequence assignment by template matching

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Homo crystallographicus--quo vadis?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Extending the limits of molecular replacement through combined simulated annealing and maximum-likelihood refinement.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Prospects for de novo phasing with de novo protein models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automated search-model discovery and preparation for structure solution by molecular replacement.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

The importance of alignment accuracy for molecular replacement.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3193589

Automatic Solution of Heavy-Atom Substructures

26 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

The use of rotation and translation functions in the interpretation of low resolution electron density maps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

Accurate bond and angle parameters for X-ray protein structure refinement

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

Stereochemically restrained refinement of macromolecular structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

A discussion of the solution for the best rotation to relate two sets of vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

PROCHECK: a program to check the stereochemical quality of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

The penultimate rotamer library

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMETH.2011.07.005

Systematic analysis of structural data as a research technique in organic chemistry

7 January 2021

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1021/AR00089A001

10.1016/J.YMETH.2011.07.005

5 March 2023

Identifiers

DOI

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21821126%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21821126

9 February 2020

PubMed publication ID

3 references

30 April 2017