(Q30004214)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

title

Tackling the widespread and critical impact of batch effects in high-throughput data (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

W Evan Johnson

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

9

Rafael A Irizarry

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

author name string

Robert B Scharpf

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Héctor Corrada Bravo

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

David Simcha

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Benjamin Langmead

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Donald Geman

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

Keith Baggerly

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

13 February 2020

language of work or name

1 reference

21 May 2017

publication date

14 September 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

published in

Nature Reviews Genetics

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

volume

11

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

page(s)

733-739

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

issue

10

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

Comprehensive genomic characterization defines human glioblastoma genes and core pathways

13 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Capturing heterogeneity in gene expression studies by surrogate variable analysis

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Common genetic variants account for differences in gene expression among ethnic groups

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Adjusting batch effects in microarray expression data using empirical Bayes methods

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

The International HapMap Project

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Effects of atmospheric ozone on microarray data quality

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Singular value decomposition for genome-wide expression data processing and modeling

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

A multilevel model to address batch effects in copy number estimation using SNP arrays.

21 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Supervised normalization of microarrays

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

A gene expression bar code for microarray data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Microarray data analysis: from disarray to consolidation and consensus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

The importance of experimental design in proteomic mass spectrometry experiments: some cautionary tales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

High-resolution serum proteomic features for ovarian cancer detection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Genomewide linkage analyses of bipolar disorder: a new sample of 250 pedigrees from the National Institute of Mental Health Genetics Initiative.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Use of proteomic patterns in serum to identify ovarian cancer

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Cross-generation and cross-laboratory predictions of Affymetrix microarrays by rank-based methods.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Multiple-laboratory comparison of microarray platforms

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Lessons from controversy: ovarian cancer screening and serum proteomics.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

High-resolution serum proteomic patterns for ovarian cancer detection.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

Gene expression in the urinary bladder: a common carcinoma in situ gene expression signature exists disregarding histopathological classification.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3880143

On the design and analysis of gene expression studies in human populations

26 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNRG2825

Run batch effects potentially compromise the usefulness of genomic signatures for ovarian cancer

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNRG2825

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

31 March 2020

Identifiers

3 references

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 February 2020

1037809833

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

3 references

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json

13 February 2020

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=20838408

21 May 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20838408%20AND%20SRC:MED&resulttype=core&format=json