(Q30155327)

19 October 2017

A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins (English)

1 reference

protein structure prediction

19 October 2017

0 references

transmembrane protein

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0 references

author

Jean-Marc Steyaert

4

0 references

Van Du T Tran

object named as

Van Du T Tran

1

0 references

author name string

Philippe Chassignet

2

1 reference

19 October 2017

Saad Sheikh

3

1 reference

19 October 2017

language of work or name

English

0 references

publication date

12 April 2012

1 reference

19 October 2017

1 reference

19 October 2017

13 Suppl 2

1 reference

19 October 2017

S5

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-s2-s5

19 October 2017

0 references

cites work

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Prediction of membrane spanning segments and topology in beta-barrel membrane proteins at better accuracy

3 June 2018

1 reference

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Beta barrel trans-membrane proteins: Enhanced prediction using a Bayesian approach

3 June 2018

1 reference

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Predicting transmembrane beta-barrels and interstrand residue interactions from sequence

3 June 2018

1 reference

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Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

3 June 2018

1 reference

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TMBETA-NET: discrimination and prediction of membrane spanning beta-strands in outer membrane proteins

3 June 2018

1 reference

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Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method

3 June 2018

1 reference

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PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

3 June 2018

1 reference

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Folding and assembly of beta-barrel membrane proteins

3 June 2018

2 references

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3 June 2018

https://api.crossref.org/works/10.1186%2F1471-2164-13-S2-S5

PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins

21 January 2018

1 reference

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Prediction of transmembrane regions of beta-barrel proteins using ANN- and SVM-based methods.

3 June 2018

1 reference

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Predicting transmembrane beta-barrels in proteomes

3 June 2018

1 reference

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A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

3 June 2018

1 reference

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A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

3 June 2018

1 reference

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Biophysical approaches to membrane protein structure determination

3 June 2018

1 reference

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Prediction of the transmembrane regions of beta-barrel membrane proteins with a neural network-based predictor

3 June 2018

1 reference

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The PSIPRED protein structure prediction server

3 June 2018

1 reference

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Effect of chain length and unsaturation on elasticity of lipid bilayers

3 June 2018

1 reference

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A comprehensive analysis of the Greek key motifs in protein beta-barrels and beta-sandwiches

3 June 2018

1 reference

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Infrared dichroism of twisted beta-sheet barrels. The structure of E. coli outer membrane proteins

3 June 2018

1 reference

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3 June 2018

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1 reference

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Shear numbers of protein beta-barrels: definition refinements and statistics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Bayesian statistical analysis of protein side-chain rotamer preferences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Principles determining the structure of beta-sheet barrels in proteins. II. The observed structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Principles determining the structure of beta-sheet barrels in proteins. I. A theoretical analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Membrane assembly of circularly permuted variants of the E. coli outer membrane protein OmpA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

A simple method for displaying the hydropathic character of a protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Amino acid difference formula to help explain protein evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Conformational and geometrical properties of idealized beta-barrels in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Neural network-based prediction of transmembrane beta-strand segments in outer membrane proteins.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-S2-S5

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2164-13-S2-S5

In silico prediction of the structure of membrane proteins: is it feasible?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394416

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22537300

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-13-S2-S5

1 reference

Dimensions Publication ID

19 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-s2-s5

1 reference

19 October 2017

1 reference