(Q30155964)

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Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information

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scholarly article

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Europe PubMed Central

PubMed publication ID

8 June 2017

Improved identification of outer membrane beta barrel proteins using primary sequence, predicted secondary structure, and evolutionary information (English)

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

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Lukasz Kurgan

2

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author name string

Marcin J Mizianty

1

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

language of work or name

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publication date

1 January 2011

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Europe PubMed Central

PubMed publication ID

8 June 2017

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

79

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Europe PubMed Central

PubMed publication ID

8 June 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

294-303

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Overcoming the challenges of membrane protein crystallography.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Do transmembrane protein superfolds exist?

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Transmembrane proteins in the Protein Data Bank: identification and classification.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Structure of the outer membrane complex of a type IV secretion system

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

beta-Barrel membrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

The versatile beta-barrel membrane protein

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Predicting transmembrane beta-barrels in proteomes

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Scoring hidden Markov models to discriminate beta-barrel membrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Identification of beta-barrel membrane proteins based on amino acid composition properties and predicted secondary structure

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

BOMP: a program to predict integral beta-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

A simple statistical method for discriminating outer membrane proteins with better accuracy.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

TMB-Hunt: a web server to screen sequence sets for transmembrane beta-barrel proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Discrimination of outer membrane proteins with improved performance

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Discrimination of outer membrane proteins using machine learning algorithms.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Influence of amino acid properties for discriminating outer membrane proteins at better accuracy.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Discrimination of outer membrane proteins using support vector machines.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Improving discrimination of outer membrane proteins by fusing different forms of pseudo amino acid composition.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Transmembrane beta-barrel proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

The ASTRAL compendium for protein structure and sequence analysis

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Data growth and its impact on the SCOP database: new developments

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Protein structure prediction servers at University College London

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Critical assessment of methods of protein structure prediction - Round VIII.

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Amino acid properties and side-chain orientation in proteins: A cross correlation approach

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

AAindex: amino acid index database, progress report 2008

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

TMBpro: secondary structure, beta-contact and tertiary structure prediction of transmembrane beta-barrel proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Wrappers for feature subset selection

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Sequence-Only Based Prediction of β -Turn Location and Type Using Collocation of Amino Acid Pairs

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Application of residue distribution along the sequence for discriminating outer membrane proteins

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22882

21 January 2018

Identifiers

10.1002/PROT.22882

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

8 June 2017

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