(Q30252957)

22 August 2017

CheckMyMetal: a macromolecular metal-binding validation tool (English)

1 reference

22 August 2017

1 reference

6

0 references

Ivan G. Shabalin

Ivan G Shabalin

4

0 references

Heping Zheng

Heping Zheng

1

0 references

Przemyslaw J Porebski

Przemyslaw J Porebski

3

0 references

Katarzyna B Handing

5

Katarzyna B Handing

1 reference

22 August 2017

2

David R Cooper

1 reference

22 August 2017

22 February 2017

1 reference

Acta crystallographica. Section D, Structural biology

22 August 2017

1 reference

22 August 2017

73

1 reference

22 August 2017

Pt 3

1 reference

22 August 2017

223-233

1 reference

Validation and correction of Zn-CysxHisy complexes.

22 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Prior knowledge or freedom of interpretation? A critical look at a recently published classification of "novel" Zn binding sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Role of Calcium in Secondary Structure Stabilization during Maturation of Nitrous Oxide Reductase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA-Catalyzed GTP Hydrolysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Crystallography and chemistry should always go together: a cautionary tale of protein complexes with cisplatin and carboplatin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

A less-biased analysis of metalloproteins reveals novel zinc coordination geometries

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Tools for macromolecular model building and refinement into electron cryo-microscopy reconstructions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Traffic within the cytochrome b6f lipoprotein complex: gating of the quinone portal

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

α-Fluorophosphonates reveal how a phosphomutase conserves transition state conformation over hexose recognition in its two-step reaction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Avoidable errors in deposited macromolecular structures: an impediment to efficient data mining

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Zinc-binding cysteines: diverse functions and structural motifs.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

X-ray absorption spectroscopy: a tool to investigate the local structure of metal-based anticancer compounds in vivo.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Local structure and dynamics of hemeproteins by X-ray absorption near edge structure spectroscopy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

A Short, Strong Hydrogen Bond in the Active Site of Human Carbonic Anhydrase II

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Crystal structure and molecular modeling study of N-carbamoylsarcosine amidase Ta0454 from Thermoplasma acidophilum

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Crystal Structures of Cisplatin Bound to a Human Copper Chaperone

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Biological X-ray absorption spectroscopy and metalloproteomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Trends in metal-binding and metalloprotein analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Data mining of metal ion environments present in protein structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Remediation of the protein data bank archive

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Effect of nickel exposure on peripheral tissues: role of oxidative stress in toxicity and possible protection by ascorbic acid

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Water structure and interactions with protein surfaces

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Structural basis for mammalian vitamin B12 transport by transcobalamin

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

DNA and its counterions: a molecular dynamics study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Near-atomic resolution crystal structure of an A-DNA decamer d(CCCGATCGGG): cobalt hexammine interaction with A-DNA

3 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

3 June 2018

https://api.crossref.org/works/10.1107%2FS2059798317001061

Crystal structure of a transition state mimic of the catalytic subunit of cAMP-dependent protein kinase

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Revealing the structure of the photosystem II chlorophyll binding proteins, CP43 and CP47.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

The Metallobiochemistry of Zinc Enzymes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Studies on the biosynthesis of the hydroxylysine-linked disaccharide unit of basement membranes and collagens. 3. Tissue and subcellular distribution of glycosyltransferases and the effect of various conditions on the enzyme levels.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Metal ion-catalyzed oxidation of proteins: biochemical mechanism and biological consequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5349434

Kinetic mechanism of the Mg2+-dependent nucleotidyl transfer catalyzed by T4 DNA and RNA ligases

3 June 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Three-dimensional structure and IgE-binding properties of mature fully active Der p 1, a clinically relevant major allergen

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Circulatory zinc transport is controlled by distinct interdomain sites on mammalian albumins

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

The architecture of metal coordination groups in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Factors governing metal-ligand distances and coordination geometries of metal complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Valence screening of water in protein crystals reveals potential Na+ binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Effects of sodium ions on DNA duplex oligomers: improved predictions of melting temperatures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Copper active sites in biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

The carboxylate shift in zinc enzymes: a computational study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Three-dimensional view of the surface motif associated with the P-loop structure: cis and trans cases of convergent evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Enzymatic “tricks”: Carboxylate shift and sulfur shift

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS2059798317001061

Metal-ligand geometry relevant to proteins and in proteins: sodium and potassium

21 January 2018

1 reference

12 December 2020

Is the bond-valence method able to identify metal atoms in protein structures?

1 reference

12 December 2020

Bioinorganic Chemistry of the Alkali Metal Ions

1 reference

12 December 2020

Manganese as a cosubstrate for the phosphorylation of the sarcoplasmic reticulum Ca-dependent adenosine triphosphatase with orthophosphate

1 reference

12 December 2020

10.1107/S2059798317001061

Identifiers

DOI

1 reference

22 August 2017

1 reference

PMC publication ID

5349434

22 August 2017

PubMed publication ID

28291757

1 reference

PMC publication ID

5349434