(Q30279249)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Cas9-chromatin binding information enables more accurate CRISPR off-target prediction (English)

1 reference

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16 February 2020

0 references

0 references

2

1 reference

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16 February 2020

Aaron R Quinlan

3

1 reference

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16 February 2020

author name string

Ritambhara Singh

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Yanjun Qi

4

1 reference

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16 February 2020

Mazhar Adli

5

1 reference

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16 February 2020

language of work or name

English

0 references

publication date

1 June 2015

1 reference

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16 February 2020

published in

Nucleic Acids Research

1 reference

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16 February 2020

volume

43

1 reference

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16 February 2020

issue

18

1 reference

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16 February 2020

page(s)

e118

1 reference

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Creative Commons Attribution 4.0 International

16 February 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Unbiased detection of off-target cleavage by CRISPR-Cas9 and TALENs using integrase-defective lentiviral vectors.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-wide detection of DNA double-stranded breaks induced by engineered nucleases.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

COSMID: A Web-based Tool for Identifying and Validating CRISPR/Cas Off-target Sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Programmable RNA recognition and cleavage by CRISPR/Cas9.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

CRISPRseek: a bioconductor package to identify target-specific guide RNAs for CRISPR-Cas9 genome-editing systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-wide identification of CRISPR/Cas9 off-targets in human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Cas-OFFinder: a fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-scale CRISPR-Cas9 knockout screening in human cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genetic screens in human cells using the CRISPR-Cas9 system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Efficient isolation of specific genomic regions and identification of associated proteins by engineered DNA-binding molecule-mediated chromatin immunoprecipitation (enChIP) using CRISPR.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

High-throughput profiling of off-target DNA cleavage reveals RNA-programmed Cas9 nuclease specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

RNA-guided gene activation by CRISPR-Cas9-based transcription factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

DNA targeting specificity of RNA-guided Cas9 nucleases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

RNA-guided human genome engineering via Cas9

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Multiplex genome engineering using CRISPR/Cas systems

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

The accessible chromatin landscape of the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

BEDTools: a flexible suite of utilities for comparing genomic features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Phage response to CRISPR-encoded resistance in Streptococcus thermophilus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4605288

Efficient genome editing in plants using a CRISPR/Cas system.

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV575

CasOT: a genome-wide Cas9/gRNA off-target searching tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV575

E-CRISP: fast CRISPR target site identification.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV575

PatMaN: rapid alignment of short sequences to large databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV575

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV575

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

PubMed publication ID

26032770

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26032770%20AND%20SRC:MED&resulttype=core&format=json