(Q30329569)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11835486%20AND%20SRC:MED&resulttype=core&format=json

7 December 2019

title

Sequence-structure homology recognition by iterative alignment refinement and comparative modeling (English)

1 reference

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7 December 2019

1 reference

3

1 reference

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7 December 2019

Kenji Mizuguchi

6

1 reference

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7 December 2019

Simon C Lovell

8

1 reference

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7 December 2019

Charlotte Deane

10

1 reference

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7 December 2019

David F Burke

13

1 reference

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7 December 2019

14

T L Blundell

1 reference

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7 December 2019

author name string

M G Williams

1

1 reference

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7 December 2019

H Shirai

2

1 reference

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7 December 2019

H G Nagendra

4

1 reference

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7 December 2019

J Mueller

5

1 reference

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7 December 2019

R N Miguel

7

1 reference

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7 December 2019

C A Innis

9

1 reference

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7 December 2019

L Chen

11

1 reference

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7 December 2019

N Campillo

12

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7 December 2019

P I de Bakker

15

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7 December 2019

language of work or name

English

0 references

publication date

1 January 2001

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7 December 2019

1 reference

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7 December 2019

volume

Suppl 5

1 reference

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7 December 2019

page(s)

92-97

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The Protein Data Bank: a computer-based archival file for macromolecular structures

7 December 2019

cites work

1 reference

21 January 2018

The Protein Data Bank

1 reference

Knowledge-based prediction of protein structures and the design of novel molecules

21 January 2018

1 reference

A new approach to protein fold recognition

21 January 2018

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Protein fold recognition using sequence-derived predictions

21 January 2018

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Alignment and searching for common protein folds using a data bank of structural templates

21 January 2018

1 reference

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

21 January 2018

1 reference

Enhanced genome annotation using structural profiles in the program 3D-PSSM

21 January 2018

1 reference

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

21 January 2018

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

Profile hidden Markov models

21 January 2018

1 reference

Profile analysis: detection of distantly related proteins

21 January 2018

1 reference

Hidden Markov models for detecting remote protein homologies

21 January 2018

1 reference

Comparison of sequence profiles. Strategies for structural predictions using sequence information

21 January 2018

1 reference

HOMSTRAD: a database of protein structure alignments for homologous families

21 January 2018

1 reference

HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.

21 January 2018

1 reference

CAMPASS: a database of structurally aligned protein superfamilies

21 January 2018

1 reference

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

21 January 2018

1 reference

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

21 January 2018

1 reference

Exhaustive matching of the entire protein sequence database

21 January 2018

1 reference

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

CAFASP2: the second critical assessment of fully automated structure prediction methods

21 January 2018

1 reference

JOY: protein sequence-structure representation and analysis.

21 January 2018

1 reference

Using CLUSTAL for multiple sequence alignments

21 January 2018

1 reference

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

SCORE: predicting the core of protein models

21 January 2018

1 reference

Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

1 reference

CODA: a combined algorithm for predicting the structurally variable regions of protein models.

21 January 2018

1 reference

Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction

21 January 2018

1 reference

Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modelling

21 January 2018

1 reference

Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure

21 January 2018

1 reference

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

21 January 2018

1 reference

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

Assessment of protein models with three-dimensional profiles

21 January 2018

1 reference

Recognition of errors in three-dimensional structures of proteins

21 January 2018

1 reference

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

21 January 2018

1 reference

Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms

21 January 2018

1 reference

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

21 January 2018

1 reference

The role of protein structure in genomics.

21 January 2018

1 reference

Analysis of interactive packing of secondary structural elements in alpha/beta units in proteins

21 January 2018

1 reference

JPred: a consensus secondary structure prediction server

21 January 2018

1 reference

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

21 January 2018

1 reference

An iterative structure-assisted approach to sequence alignment and comparative modeling

21 January 2018

1 reference

Identification of native protein folds amongst a large number of incorrect models. The calculation of low energy conformations from potentials of mean force

21 January 2018

1 reference