(Q30330160)

13 September 2017

Ab initio protein structure prediction on a genomic scale: application to the Mycoplasma genitalium genome (English)

1 reference

protein structure prediction

13 September 2017

Mycoplasma genitalium

0 references

0 references

5

Jeffrey Skolnick

1 reference

13 September 2017

1

Daisuke Kihara

1 reference

13 September 2017

Hui Lu

3

0 references

Andrzej Koliński

object named as

Andrzej Kolinski

series ordinal

4

0 references

Yang Zhang

object named as

Yang Zhang

series ordinal

2

0 references

language of work or name

English

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publication date

16 April 2002

1 reference

Proceedings of the National Academy of Sciences of the United States of America

13 September 2017

1 reference

13 September 2017

99

1 reference

13 September 2017

5993-5998

1 reference

13 September 2017

9

1 reference

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Enhancement of protein modeling by human intervention in applying the automatic programs 3D-JIGSAW and 3D-PSSM.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

GTOP: a database of protein structures predicted from genome sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

A distance-dependent atomic knowledge-based potential for improved protein structure selection.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Prospects for ab initio protein structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

The COG database: new developments in phylogenetic classification of proteins from complete genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

An overview of structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

KEGG: kyoto encyclopedia of genes and genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Functional insights from structural predictions: analysis of the Escherichia coli genome.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Distribution of protein folds in the three superkingdoms of life.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

The PROSITE database, its status in 1999

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the glutaredoxin/thioredoxin disulfide oxidoreductase activity.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Assembly of protein structure from sparse experimental data: an efficient Monte Carlo model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

The Minimal Gene Complement of Mycoplasma genitalium

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Improved tools for biological sequence comparison

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=122890

Replica Monte Carlo simulation of spin glasses.

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.092135699

An automatic homology modeling method consisting of database searches and simulated annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.092135699

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.092135699

Prediction of membrane proteins based on classification of transmembrane segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.092135699

21 January 2018

Identifiers

DOI

10.1073/PNAS.092135699

1 reference

13 September 2017

0 references

1 reference

13 September 2017

1 reference

PMCID

122890