(Q30332832)

13 October 2017

A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristics (English)

1 reference

13 October 2017

A Novel Approach to Decoy Set Generation: Designing a Physical Energy Function Having Local Minima with Native Structure Characteristics (English)

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00323-1

1 January 2024

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00323-1

1 January 2024

2

Michael Levitt

1 reference

13 October 2017

Chen Keasar

1

1 reference

13 October 2017

language of work or name

English

0 references

publication date

1 May 2003

1 reference

13 October 2017

23 May 2003

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12742025

full work available at URL

1 January 2024

number of pages

16

1 reference

based on heuristic

inferred from page(s)

https://europepmc.org/articles/pmc2693481?pdf=render

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12742025

https://europepmc.org/articles/PMC2693481

1 January 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12742025

https://europepmc.org/articles/PMC2693481?pdf=render

1 January 2024

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12742025

https://doi.org/10.1016/s0022-2836(03)00323-1

1 January 2024

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12742025

https://api.elsevier.com/content/article/PII:S0022283603003231?httpAccept=text/xml

1 January 2024

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00323-1

https://api.elsevier.com/content/article/PII:S0022283603003231?httpAccept=text/plain

1 January 2024

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00323-1

Journal of Molecular Biology

1 January 2024

published in

1 reference

13 October 2017

329

1 reference

13 October 2017

1

1 reference

13 October 2017

159-174

1 reference

Optimization by Simulated Annealing

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Prospects for ab initio protein structural genomics.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

A novel method for sampling alpha-helical protein backbones.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Ab initio construction of protein tertiary structures using a hierarchical approach

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Calculation of protein conformation by global optimization of a potential energy function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Improved ab initio predictions with a simplified, flexible geometry model.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Ab initio folding of proteins using restraints derived from evolutionary information

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Efficient dynamics in the space of contact maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Protein folding simulations with genetic algorithms and a detailed molecular description

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Energy functions that discriminate X-ray and near native folds from well-constructed decoys

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Exploring conformational space with a simple lattice model for protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

The complexity and accuracy of discrete state models of protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Statistics of sequence-structure threading

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Computer simulation of protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Assessment of some problems associated with prediction of the three-dimensional structure of a protein from its amino-acid sequence

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Recognition of native structure from complete enumeration of low-resolution models with constraints

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

Protein folding by restrained energy minimization and molecular dynamics

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2693481

A new approach to variable metric algorithms

26 November 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900323-1

Empirical modifications to the Amber/OPLS potential for predicting the solution conformations of cyclic peptides by vacuum calculations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900323-1

7 January 2021

Identifiers

1 reference

13 October 2017

1 reference

13 October 2017

1 reference