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Database searching by flexible protein structure alignment.
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
title
Database searching by flexible protein structure alignment.
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
main subject
database
0 references
author
Adam Godzik
series ordinal
2
1 reference
stated in
Europe PubMed Central
PubMed ID
15215527
retrieved
20 June 2017
author name string
Yuzhen Ye
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
publication date
1 July 2004
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
published in
Protein Science
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
volume
13
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
page(s)
1841-1850
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
issue
7
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
cites work
Sensitivity and selectivity in protein structure comparison
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Flexible structure alignment by chaining aligned fragment pairs allowing twists
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Structural genomics: computational methods for structure analysis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Classification schemes for protein structure and function.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Overview of structural genomics: from structure to function
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Crystal structure of tabtoxin resistance protein complexed with acetyl coenzyme A reveals the mechanism for beta-lactam acetylation
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Deep trefoil knot implicated in RNA binding found in an archaebacterial protein
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PubMed Central
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3 June 2018
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
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PubMed Central
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3 June 2018
An enzyme with a deep trefoil knot for the active-site architecture
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
An alternative view of protein fold space
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
The Protein Data Bank
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
A unified statistical framework for sequence comparison and structure comparison
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
Empirical statistical estimates for sequence similarity searches.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
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3 June 2018
CATH--a hierarchic classification of protein domain structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
The structural alignment between two proteins: is there a unique answer?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Surprising similarities in structure comparison
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Local alignment statistics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Threading a database of protein cores
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Optimal protein structure alignments by multiple linkage clustering: application to distantly related proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Protein structure comparison by alignment of distance matrices
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
SCOP: a structural classification of proteins database for the investigation of sequences and structures
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Structural and Functional Aspects of Domain Motions in Proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
3 June 2018
Quantifying the similarities within fold space.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Flexible protein alignment and hinge detection.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Advanced pairwise structure alignments of proteins and analysis of conformational changes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Protein flexibility predictions using graph theory
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Structure comparison and structure patterns.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2279924
retrieved
26 November 2018
Identifiers
DOI
10.1110/PS.03602304
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
PMCID
2279924
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
PubMed ID
15215527
1 reference
stated in
Europe PubMed Central
PMCID
2279924
retrieved
13 October 2017
ResearchGate publication ID
8491787
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