(Q30352109)

20 June 2017

title

Comparison of stochastic optimization methods for all-atom folding of the Trp-Cage protein. (English)

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20 June 2017

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Alexander Schug

1

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20 June 2017

Thomas Herges

2

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20 June 2017

Abhinav Verma

3

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20 June 2017

Kyu Hwan Lee

4

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20 June 2017

Wolfgang Wenzel

5

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20 June 2017

publication date

1 December 2005

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20 June 2017

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20 June 2017

volume

6

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20 June 2017

issue

12

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20 June 2017

page(s)

2640-2646

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Protein structure prediction and structural genomics

20 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200500213

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Protein structure prediction in 2002.

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Reproducible Protein Folding with the Stochastic Tunneling Method

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In Silico Folding of a Three Helix Protein and Characterization of Its Free-Energy Landscape in an All-Atom Force Field

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An all-atom force field for tertiary structure prediction of helical proteins

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

All-atom folding of the trp-cage protein with an adpative parallel tempering method

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

All-atom folding of the three-helix HIV accessory protein with an adaptive parallel tempering method.

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Predictive in Silico All-Atom Folding of a Four-Helix Protein with a Free-Energy Model

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Absolute comparison of simulated and experimental protein-folding dynamics

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7 January 2021

Three-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures

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7 January 2021

The complete folding pathway of a protein from nanoseconds to microseconds

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7 January 2021

Designing a 20-residue protein

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Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins

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7 January 2021

Exploration of the free-energy surface of a three-helix peptide with stochastic optimization methods

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7 January 2021

Role of electrostatic screening in determining protein main chain conformational preferences

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Solvation energy in protein folding and binding

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7 January 2021

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

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7 January 2021

Protein folding simulations with genetic algorithms and a detailed molecular description

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7 January 2021

Stochastic Tunneling Approach for Global Minimization of Complex Potential Energy Landscapes

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7 January 2021

Global Optimization by Basin-Hopping and the Lowest Energy Structures of Lennard-Jones Clusters Containing up to 110 Atoms

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Effect of salt bridges on the energy landscape of a model protein

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Optimization by Simulated Annealing

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Numerical comparisons of three recently proposed algorithms in the protein folding problem

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https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Parallel tempering simulations of HP-36.

1 reference

https://api.crossref.org/works/10.1002%2FCPHC.200500213

7 January 2021

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

1 reference

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7 January 2021

All-Atom Structure Prediction and Folding Simulations of a Stable Protein

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7 January 2021

Identifiers

DOI

10.1002/CPHC.200500213

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20 June 2017

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