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Improving the quality of protein structure models by selecting from alignment alternatives
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1 reference
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Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
title
Improving the quality of protein structure models by selecting from alignment alternatives
(English)
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
author
Stefano Toppo
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
Thomas Lengauer
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4
1 reference
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Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
Silvio C.E. Tosatto
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5
1 reference
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Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
author name string
Oliver Sander
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
Ingolf Sommer
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
publication date
27 July 2006
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
volume
7
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Europe PubMed Central
PMCID
1579234
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
page(s)
364
1 reference
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Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
copyright license
Creative Commons Attribution 2.0 Generic
start time
27 July 2006
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
1 reference
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April 2022 Public Data File from Crossref
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-7-364
0 references
cites work
Large-scale prediction of protein structure and function from sequence.
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PubMed Central
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3 June 2018
Servers for protein structure prediction.
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PubMed Central
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3 June 2018
The victor/FRST function for model quality estimation.
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PubMed Central
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3 June 2018
Progress over the first decade of CASP experiments.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Prediction of CASP6 structures using automated Robetta protocols
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Assessment of predictions submitted for the CASP6 comparative modeling category
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Critical assessment of methods of protein structure prediction (CASP)--round 6.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Scoring function for automated assessment of protein structure template quality
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Scoring profile-to-profile sequence alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
SCOP database in 2004: refinements integrate structure and sequence family data
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
The ASTRAL Compendium in 2004
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
A graph-theory algorithm for rapid protein side-chain prediction
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Comparative protein structure modeling by iterative alignment, model building and model assessment
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
LGA: A method for finding 3D similarities in protein structures
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
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3 June 2018
Profile-profile alignment: a powerful tool for protein structure prediction.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
In search for more accurate alignments in the twilight zone
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
A divide and conquer approach to fast loop modeling
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
MaxSub: an automated measure for the assessment of protein structure prediction quality.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Comparison of sequence profiles. Strategies for structural predictions using sequence information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
The ASTRAL compendium for protein structure and sequence analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Processing and analysis of CASP3 protein structure predictions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Recognition of errors in three-dimensional structures of proteins
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Assessment of protein models with three-dimensional profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
3 June 2018
Improving sequence-based fold recognition by using 3D model quality assessment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
26 November 2018
In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
26 November 2018
Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1579234
retrieved
26 November 2018
Identifiers
DOI
10.1186/1471-2105-7-364
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
DBLP publication ID
journals/bmcbi/SommerTSLT06
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1036258457
0 references
PMCID
1579234
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
PubMed ID
16872519
1 reference
stated in
Europe PubMed Central
PMCID
1579234
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16872519%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 December 2019
ResearchGate publication ID
6912962
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