(Q30356350)

19 August 2017

The influence of N-linked glycans on the molecular dynamics of the HIV-1 gp120 V3 loop. (English)

1 reference

molecular dynamics simulation

19 August 2017

0 references

author

Elisa Fadda

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Oliver C Grant

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

author name string

Natasha T Wood

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Robert Davis

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Joanne C Martin

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Robert J Woods

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Simon A Travers

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

language of work or name

English

0 references

publication date

26 November 2013

1 reference

19 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

page(s)

e80301

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

10 June 2020

copyright license

start time

26 November 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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Glycosylation patterns of HIV-1 gp120 depend on the type of expressing cells and affect antibody recognition.

3 June 2018

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CCR5 antagonists: host-targeted antiviral agents for the treatment of HIV infection, 4 years on.

3 June 2018

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3 June 2018

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Expression, glycoform characterization, and antibody-binding of HIV-1 V3 glycopeptide domain fused with human IgG1-Fc

3 June 2018

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3 June 2018

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3 June 2018

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The carbohydrate at asparagine 386 on HIV-1 gp120 is not essential for protein folding and function but is involved in immune evasion.

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Structural definition of a conserved neutralization epitope on HIV-1 gp120

3 June 2018

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

3 June 2018

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3 June 2018

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Structure of a V3-containing HIV-1 gp120 core

3 June 2018

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Identification of two N-linked glycosylation sites within the core of the simian immunodeficiency virus glycoprotein whose removal enhances sensitivity to soluble CD4.

3 June 2018

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Exploring the helix-coil transition via all-atom equilibrium ensemble simulations

3 June 2018

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Modified HIV envelope proteins with enhanced binding to neutralizing monoclonal antibodies

3 June 2018

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3 June 2018

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N-linked glycosylation of the V3 loop and the immunologically silent face of gp120 protects human immunodeficiency virus type 1 SF162 from neutralization by anti-gp120 and anti-gp41 antibodies

3 June 2018

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Intrapatient alterations in the human immunodeficiency virus type 1 gp120 V1V2 and V3 regions differentially modulate coreceptor usage, virus inhibition by CC/CXC chemokines, soluble CD4, and the b12 and 2G12 monoclonal antibodies

3 June 2018

1 reference

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Improved coreceptor usage prediction and genotypic monitoring of R5-to-X4 transition by motif analysis of human immunodeficiency virus type 1 env V3 loop sequences

3 June 2018

1 reference

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Antibody neutralization and escape by HIV-1

3 June 2018

1 reference

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The N-linked glycan g15 within the V3 loop of the HIV-1 external glycoprotein gp120 affects coreceptor usage, cellular tropism, and neutralization

3 June 2018

1 reference

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HIV-1 evades antibody-mediated neutralization through conformational masking of receptor-binding sites

3 June 2018

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Molecular dynamics simulations of biomolecules

3 June 2018

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The mannose-dependent epitope for neutralizing antibody 2G12 on human immunodeficiency virus type 1 glycoprotein gp120.

3 June 2018

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HIV-1 receptors and cell tropism

3 June 2018

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Evolutionary and immunological implications of contemporary HIV-1 variation.

3 June 2018

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Improved success of phenotype prediction of the human immunodeficiency virus type 1 from envelope variable loop 3 sequence using neural networks

3 June 2018

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Folding of the human immunodeficiency virus type 1 envelope glycoprotein in the endoplasmic reticulum

3 June 2018

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Energetics of the HIV gp120-CD4 binding reaction

3 June 2018

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The N-linked glycan of the V3 region of HIV-1 gp120 and CXCR4-dependent multiplication of a human immunodeficiency virus type 1 lymphocyte-tropic variant.

3 June 2018

1 reference

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Selection for neutralization resistance of the simian/human immunodeficiency virus SHIVSF33A variant in vivo by virtue of sequence changes in the extracellular envelope glycoprotein that modify N-linked glycosylation.

3 June 2018

1 reference

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Location-specific, unequal contribution of the N glycans in simian immunodeficiency virus gp120 to viral infectivity and removal of multiple glycans without disturbing infectivity

3 June 2018

1 reference

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Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody

3 June 2018

1 reference

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The HIV-1 Envelope Glycoproteins: Fusogens, Antigens, and Immunogens

3 June 2018

1 reference

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Determinants of entry cofactor utilization and tropism in a dualtropic human immunodeficiency virus type 1 primary isolate.

3 June 2018

1 reference

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Specific N-linked and O-linked glycosylation modifications in the envelope V1 domain of simian immunodeficiency virus variants that evolve in the host alter recognition by neutralizing antibodies

3 June 2018

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Selective employment of chemokine receptors as human immunodeficiency virus type 1 coreceptors determined by individual amino acids within the envelope V3 loop

3 June 2018

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CD4-induced interaction of primary HIV-1 gp120 glycoproteins with the chemokine receptor CCR-5.

3 June 2018

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The V3 domain of the HIV-1 gp120 envelope glycoprotein is critical for chemokine-mediated blockade of infection

3 June 2018

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VMD: visual molecular dynamics

3 June 2018

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HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5

3 June 2018

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HIV-1 Entry Cofactor: Functional cDNA Cloning of a Seven-Transmembrane, G Protein-Coupled Receptor

3 June 2018

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Rapid selection for an N-linked oligosaccharide by monoclonal antibodies directed against the V3 loop of human immunodeficiency virus type 1.

3 June 2018

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Human immunodeficiency virus type 1 tropism for T-lymphoid cell lines: role of the V3 loop and C4 envelope determinants

3 June 2018

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A single amino acid substitution in the V1 loop of human immunodeficiency virus type 1 gp120 alters cellular tropism.

3 June 2018

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Glycosylation is necessary for the correct folding of human immunodeficiency virus gp120 in CD4 binding

3 June 2018

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Effects of glycosylation on protein structure and dynamics in ribonuclease B and some of its individual glycoforms

3 June 2018

1 reference

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Predictors of rapid progression to AIDS in HIV-1 seroconverters

3 June 2018

1 reference

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Syncytium-inducing and non-syncytium-inducing capacity of human immunodeficiency virus type 1 subtypes other than B: phenotypic and genotypic characteristics. WHO Network for HIV Isolation and Characterization

3 June 2018

1 reference

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Carbohydrate structures of the human-immunodeficiency-virus (HIV) recombinant envelope glycoprotein gp120 produced in Chinese-hamster ovary cells

3 June 2018

1 reference

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Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells

3 June 2018

1 reference

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Conformational changes induced in the human immunodeficiency virus envelope glycoprotein by soluble CD4 binding

3 June 2018

1 reference

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The emergence of simian/human immunodeficiency viruses

3 June 2018

1 reference

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Phenotype-associated sequence variation in the third variable domain of the human immunodeficiency virus type 1 gp120 molecule

3 June 2018

1 reference

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Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution

3 June 2018

1 reference

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Enhanced immunogenicity of a human immunodeficiency virus type 1 env DNA vaccine by manipulating N-glycosylation signals. Effects of elimination of the V3 N306 glycan

3 June 2018

1 reference

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Epitopes for broad and potent neutralizing antibody responses during chronic infection with human immunodeficiency virus type 1.

21 January 2018

1 reference

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CCR5 use by human immunodeficiency virus type 1 is associated closely with the gp120 V3 loop N-linked glycosylation site

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

A new perspective on V3 phenotype prediction.

21 January 2018

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Mechanical compressibility of the glycosylphosphatidylinositol (GPI) anchor backbone governed by independent glycosidic linkages.

21 January 2018

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GROMACS: A message-passing parallel molecular dynamics implementation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

Impact of deglycosylation and thermal stress on conformational stability of a full length murine IgG2a monoclonal antibody: observations from molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

N-Linked Glycosylation of the HIV Type-1 gp120 Envelope Glycoprotein as a Major Determinant of CCR5 and CXCR4 Coreceptor Utilization

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

Predicting HIV coreceptor usage on the basis of genetic and clinical covariates.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3841175

HIV-1 subtype and second-receptor use

26 November 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0080301

Glycosylation assists binding of HIV protein gp120 to human CD4 receptor

21 January 2018

1 reference

12 December 2020

Envelope V3 amino acid sequence predicts HIV-1 phenotype (co-receptor usage and tropism for macrophages)

1 reference

12 December 2020

Relation of phenotype evolution of HIV-1 to envelope V2 configuration

1 reference

12 December 2020

Improved prediction of coreceptor usage and phenotype of HIV-1 based on combined features of V3 loop sequence using random forest

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0080301

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

24303005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24303005%20AND%20SRC:MED&resulttype=core&format=json