(Q30362931)

English

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

scientific article

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies. (English)

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

object named as

Junji Iwahara

2

0 references

Shigeyuki Yokoyama

object named as

Shigeyuki Yokoyama

8

0 references

object named as

Peter Güntert

6

0 references

Naohiro Kobayashi

1

object named as

Naohiro Kobayashi

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

3

object named as

Seizo Koshiba

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

5

object named as

Naoya Tochio

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

Takanori Kigawa

7

object named as

Takanori Kigawa

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

author name string

Tadashi Tomizawa

4

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

18 July 2007

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

Journal of Biomolecular NMR

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

39

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

31-52

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

https://scigraph.springernature.com/pub.10.1007/s10858-007-9175-5

0 references

AURELIA, a program for computer-aided analysis of multidimensional NMR spectra.

1 reference

https://api.crossref.org/works/10.1007%2FS10858-007-9175-5

21 January 2018

Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ansig for Windows: an interactive computer program for semiautomatic assignment of protein NMR spectra.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The penultimate rotamer library

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated sequencing of amino acid spin systems in proteins using multidimensional HCC(CO)NH-TOCSY spectroscopy and constraint propagation methods from artificial intelligence

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Torsion angle dynamics for NMR structure calculation with the new program DYANA

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WHAT IF: a molecular modeling and drug design program

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The program XEASY for computer-supported NMR spectral analysis of biological macromolecules

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated backbone assignment of labeled proteins using the threshold accepting algorithm

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated analysis of protein NMR assignments using methods from artificial intelligence.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated resonance assignment of proteins using heteronuclear 3D NMR. 2. Side chain and sequence-specific assignment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein sequential resonance assignments by combinatorial enumeration using 13C alpha chemical shifts and their (i, i-1) sequential connectivities

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PACES: Protein sequential assignment by computer-assisted exhaustive search.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Assignment validation software suite for the evaluation and presentation of protein resonance assignment data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automation of NMR structure determination of proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cell-free production and stable-isotope labeling of milligram quantities of proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR View: A computer program for the visualization and analysis of NMR data

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated probabilistic method for assigning backbone resonances of (13C,15N)-labeled proteins.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

iDC: A comprehensive toolkit for the analysis of residual dipolar couplings for macromolecular structure determination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein heteronuclear NMR assignments using mean-field simulated annealing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NvAssign: protein NMR spectral assignment with NMRView

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Homology modeling, model and software evaluation: three related resources

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Smartnotebook: a semi-automated approach to protein sequential NMR resonance assignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated sequence-specific NMR assignment of homologous proteins using the program GARANT.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A framework for scientific data modeling and automated software development

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated analysis of protein NMR assignments and structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A tracked approach for automated NMR assignments in proteins (TATAPRO).

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CAMRA: chemical shift based computer aided protein NMR assignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The interpretation of protein structures: Estimation of static accessibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CCPN project: an interim report on a data model for the NMR community

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CCPN data model for NMR spectroscopy: development of a software pipeline

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative evaluation of experimental NMR restraints.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Errors in protein structures

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

IBIS--a tool for automated sequential assignment of protein spectra from triple resonance experiments

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation of Escherichia coli cell extract for highly productive cell-free protein expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific NMR assignment of proteins by global fragment mapping with the program MAPPER.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17636449

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S10858-007-9175-5

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

20 June 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q30362931&oldid=1744229936"