(Q30365629)

13 October 2017

Adaptive evolution and environmental durability jointly structure phylodynamic patterns in avian influenza viruses (English)

1 reference

13 October 2017

1 reference

1 reference

2

1 reference

13 October 2017

1

Benjamin Roche

1 reference

13 October 2017

4

David E Stallknecht

1 reference

13 October 2017

6

Pejman Rohani

1 reference

13 October 2017

Justin Brown

3

1 reference

PMCID

4130664

13 October 2017

language of work or name

English

0 references

publication date

12 August 2014

1 reference

13 October 2017

1 reference

13 October 2017

12

1 reference

13 October 2017

8

1 reference

13 October 2017

e1001931

1 reference

Creative Commons Attribution 4.0 International

13 October 2017

start time

12 August 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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Integrating influenza antigenic dynamics with molecular evolution

3 June 2018

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Influenza a virus migration and persistence in North American wild birds

3 June 2018

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Human infection with avian influenza A H7N9 virus: an assessment of clinical severity.

3 June 2018

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Canalization of the evolutionary trajectory of the human influenza virus

3 June 2018

1 reference

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Environmental and demographic determinants of avian influenza viruses in waterfowl across the contiguous United States

3 June 2018

1 reference

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Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza

3 June 2018

1 reference

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Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

3 June 2018

1 reference

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Strength and tempo of selection revealed in viral gene genealogies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Persistence of avian influenza viruses in lake sediment, duck feces, and duck meat

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

An agent-based model to study the epidemiological and evolutionary dynamics of Influenza viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Regularization Paths for Generalized Linear Models via Coordinate Descent

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Can preening contribute to influenza A virus infection in wild waterbirds?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Dynamics and ecological consequences of avian influenza virus infection in greater white-fronted geese in their winter staging areas.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Discovering the phylodynamics of RNA viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Environmental transmission of low pathogenicity avian influenza viruses and its implications for pathogen invasion

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

The role of environmental transmission in recurrent avian influenza epidemics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Avian influenza virus in water: infectivity is dependent on pH, salinity and temperature

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Frequent inter-species transmission and geographic subdivision in avian influenza viruses from wild birds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Environmental contamination during influenza A virus (H5N1) outbreaks, Cambodia, 2006.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

The evolutionary genetics and emergence of avian influenza viruses in wild birds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

The genomic and epidemiological dynamics of human influenza A virus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Chlorine inactivation of highly pathogenic avian influenza virus (H5N1)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

BEAST: Bayesian evolutionary analysis by sampling trees

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Epochal evolution shapes the phylodynamics of interpandemic influenza A (H3N2) in humans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Control of avian influenza in poultry.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Global patterns of influenza a virus in wild birds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Development and application of reference antisera against 15 hemagglutinin subtypes of influenza virus by DNA vaccination of chickens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Bayesian coalescent inference of past population dynamics from molecular sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Influenza A viruses of migrating wild aquatic birds in North America.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Influenza: old and new threats

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Unifying the epidemiological and evolutionary dynamics of pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Ecological and immunological determinants of influenza evolution.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Dynamics and selection of many-strain pathogens

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Coexistence and relative abundance in forest trees

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Global epidemiology of influenza: past and present.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Coinfection of wild ducks by influenza A viruses: distribution patterns and biological significance

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Possible waterborne transmission and maintenance of influenza viruses in domestic ducks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Evolution and ecology of influenza A viruses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Water-Borne Transmission of Influenza A Viruses?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Intestinal influenza: Replication and characterization of influenza viruses in ducks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4130664

Avian flu: H5N1 virus outbreak in migratory waterfowl.

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Avian flu: multiple introductions of H5N1 in Nigeria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

21 January 2018

Yes, but will it jump?

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Water-borne transmission drives avian influenza dynamics in wild birds: the case of the 2005-2006 epidemics in the Camargue area.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Persistence of H5 and H7 avian influenza viruses in water

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

A general multi-strain model with environmental transmission: invasion conditions for the disease-free and endemic states.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Environmental Variability Promotes Coexistence in Lottery Competitive Systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Microbial seed banks: the ecological and evolutionary implications of dormancy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Synchrony, waves, and spatial hierarchies in the spread of influenza.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Unexpected heat resistance of Italian low-pathogenicity and high-pathogenicity avian influenza A viruses of H7 subtype to prolonged exposure at 37 degrees C

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1001931

Effects of pH, temperature, and salinity on persistence of avian influenza viruses in water.

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25116957

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Biological and molecular characterization of H13N2 influenza type A viruses isolated from turkeys and surface water

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25116957

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.1001931

1 reference

13 October 2017

1 reference

13 October 2017

1 reference

PMCID

4130664