(Q30368561)

13 November 2017

Assessing side-chain perturbations of the protein backbone: a knowledge-based classification of residue Ramachandran space. (English)

1 reference

13 November 2017

4

Marina Vannucci

1 reference

13 November 2017

David B Dahl

1

1 reference

13 November 2017

Zach Bohannan

series ordinal

2

1 reference

13 November 2017

Qianxing Mo

series ordinal

3

1 reference

13 November 2017

Jerry Tsai

series ordinal

5

1 reference

13 November 2017

language of work or name

English

0 references

publication date

29 February 2008

1 reference

Journal of Molecular Biology

13 November 2017

1 reference

13 November 2017

378

1 reference

13 November 2017

3

1 reference

13 November 2017

749-758

1 reference

Growth of novel protein structural data.

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

The Shared-Electron Chemical Bond

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

An active enzyme constructed from a 9-amino acid alphabet

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Main-chain conformational tendencies of amino acids

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Revisiting the Ramachandran plot: Hard‐sphere repulsion, electrostatics, and H‐bonding in the α‐helix

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Stereochemistry of polypeptide chain configurations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

PISCES: a protein sequence culling server

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Conformations of amino acids in proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Databases in protein crystallography

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Functional rapidly folding proteins from simplified amino acid sequences.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Phi/psi-chology: Ramachandran revisited

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Conformation of Polypeptides and Proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Amino acid substitution matrices from protein blocks

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Simplified amino acid alphabets for protein fold recognition and implications for folding.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

A computational approach to simplifying the protein folding alphabet.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440669

Sequence alignment approach to pick up conformationally similar protein fragments

26 November 2018

1 reference

12 December 2020

Reduction of protein sequence complexity by residue grouping

1 reference

12 December 2020

Disallowed Ramachandran conformations of amino acid residues in protein structures

1 reference

12 December 2020

Conformational similarity indices between different residues in proteins and alpha-helix propensities

1 reference

12 December 2020

Bayesian statistical studies of the Ramachandran distribution

1 reference

12 December 2020

Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices

1 reference

12 December 2020

10.1016/J.JMB.2008.02.043

Identifiers

DOI

1 reference

13 November 2017

1 reference

13 November 2017

PubMed publication ID

18377931

1 reference