(Q30372958)

18 August 2017

RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases (English)

1 reference

18 August 2017

1 reference

2

Ruth Nussinov

1 reference

18 August 2017

3

Haim J Wolfson

1 reference

18 August 2017

Alexandra Shulman-Peleg

series ordinal

1

1 reference

18 August 2017

language of work or name

English

0 references

publication date

25 October 2008

1 reference

18 August 2017

Nucleic Acids Research

1 reference

18 August 2017

37

1 reference

18 August 2017

Database issue

1 reference

18 August 2017

D369-73

1 reference

Prediction of interacting single-stranded RNA bases by protein-binding patterns

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

RNA-binding proteins: modular design for efficient function

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Amino acid residue doublet propensity in the protein-RNA interface and its application to RNA interface prediction

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Pfam: clans, web tools and services

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Protein families and RNA recognition

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Rfam: annotating non-coding RNAs in complete genomes

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Three-dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U-turns

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

SCOR: Structural Classification of RNA, version 2.0.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

RNAMotif, an RNA secondary structure definition and search algorithm

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Single-stranded-RNA binding proteins

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Themes in RNA-protein recognition.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

SCOP: a structural classification of proteins database for the investigation of sequences and structures

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

A neural network method for identification of RNA-interacting residues in protein.

4 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

A new method to detect related function among proteins independent of sequence and fold homology.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686467

Evaluating conformational changes in protein structures binding RNA

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18953028

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN759

1 reference

journals/nar/Shulman-PelegNW09

18 August 2017

1 reference

DBLP Dataset 2021-01-02

release_75x36j3qmbhyvanr57t3qlvxyi

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/75x36j3qmbhyvanr57t3qlvxyi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

18 August 2017

PubMed publication ID

18953028

1 reference