(Q30375702)

18 August 2017

Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates (English)

1 reference

protein function prediction

18 August 2017

0 references

protein structure prediction

0 references

1 reference

5

1 reference

18 August 2017

7

Olivier Lichtarge

1 reference

18 August 2017

R Matthew Ward

1

1 reference

18 August 2017

Eric Venner

2

1 reference

18 August 2017

Bryce Daines

3

1 reference

18 August 2017

Stephen Murray

4

1 reference

18 August 2017

David M Kristensen

6

1 reference

18 August 2017

language of work or name

English

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publication date

23 March 2009

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18 August 2017

2

1 reference

inferred from page(s)

published in

Bioinformatics

1 reference

18 August 2017

25

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18 August 2017

11

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18 August 2017

1426-1427

1 reference

Exploring the structure and function paradigm.

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

ET viewer: an application for predicting and visualizing functional sites in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Recurrent use of evolutionary importance for functional annotation of proteins based on local structural similarity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Evolutionary trace report_maker: a new type of service for comparative analysis of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

ProFunc: a server for predicting protein function from 3D structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

A family of evolution-entropy hybrid methods for ranking protein residues by importance.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Prediction and confirmation of a site critical for effector regulation of RGS domain activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Can sequence determine function?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

An evolutionary trace method defines binding surfaces common to protein families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Selection of representative protein data sets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

An evolution based classifier for prediction of protein interfaces without using protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2682511

Distinct faces of the Ku heterodimer mediate DNA repair and telomeric functions

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19307237

12 December 2020

inferred from PubMed ID database lookup

An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19307237

12 December 2020

inferred from PubMed ID database lookup

Errors in genome annotation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19307237

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP160

1 reference

journals/bioinformatics/WardVDMEKL09

18 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

18 August 2017

PubMed publication ID

19307237

1 reference