(Q30376273)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

Detection of discriminative sequence patterns in the neighborhood of proline cis peptide bonds and their functional annotation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

author name string

Konstantinos P Exarchos

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Themis P Exarchos

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Anastassios N Troganis

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Dimitrios I Fotiadis

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

publication date

20 April 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

page(s)

113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

26 January 2020

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/2678097

inferred from PubMed Central ID database lookup

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

20 June 2018

The 20 years of PROSITE

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Prolyl cis-trans isomerization as a molecular timer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Prediction of cis/trans isomerization in proteins using PSI-BLAST profiles and secondary structure information.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Cis-trans isomerization at a proline opens the pore of a neurotransmitter-gated ion channel.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

PISCES: recent improvements to a PDB sequence culling server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Statistically significant dependence of the Xaa-Pro peptide bond conformation on secondary structure and amino acid sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Conservation of cis prolyl bonds in proteins during evolution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

WebLogo: A Sequence Logo Generator

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Support vector machines for prediction of peptidyl prolyl cis/trans isomerization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Cis-trans isomerization of organic molecules and biomolecules: implications and applications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

VADAR: a web server for quantitative evaluation of protein structure quality

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Preferred proline puckerings in cis and trans peptide groups: implications for collagen stability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Dictionary building via unsupervised hierarchical motif discovery in the sequence space of natural proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

20 June 2018

Peptide bonds revisited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

A study of combined structure/sequence profiles.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Occurrence and role of cis peptide bonds in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Relations between protein sequence and structure and their significance

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Weak correlation between predictive power of individual sequence patterns and overall prediction accuracy in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Prediction of cis/trans isomerization using feature selection and support vector machines.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Predicting peptide bond conformation using feature selection and the Naïve Bayes approach.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Cis-trans isomerization and puckering of proline residue

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2678097

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

26 November 2018

1 reference

12 December 2020

Prediction of prolyl residues incis-conformation in protein structures on the basis of the amino acid sequence

1 reference

12 December 2020

Pyrrolidine ring puckering in cis and trans-proline residues in proteins and polypeptides. Different puckers are favoured in certain situations

1 reference

12 December 2020

Sequence patterns associated with disordered regions in proteins

1 reference

12 December 2020

COPS--cis/trans peptide bond conformation prediction of amino acids on the basis of secondary structure information

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2105-10-113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/ExarchosEPTF09

26 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19379512%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

19379512

1 reference