Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q30380400)
Watch
English
Shape and evolution of thermostable protein structure.
scientific article
In more languages
default for all languages
No label defined
No description defined
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
title
Shape and evolution of thermostable protein structure
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
main subject
protein evolution
0 references
author
Ryan G Coleman
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
author name string
Kim A Sharp
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
language of work or name
English
0 references
publication date
1 February 2010
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
published in
Proteins
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
volume
78
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
issue
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
page(s)
420-433
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
cites work
Finding and characterizing tunnels in macromolecules with application to ion channels and pores.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
"Hot cores" in proteins: comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Gaining and losing the thermophilic adaptation in prokaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
A hierarchy of timescales in protein dynamics is linked to enzyme catalysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Quantifying the relationship of protein burying depth and sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Thermodynamic stability and folding of proteins from hyperthermophilic organisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Full-sequence computational design and solution structure of a thermostable protein variant
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Dynamic arrangement of ion pairs and individual contributions to the thermal stability of the cofactor-binding domain of glutamate dehydrogenase from Thermotoga maritima.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Mechanisms for stabilisation and the maintenance of solubility in proteins from thermophiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Q28766387
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
A network representation of protein structures: implications for protein stability.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Physics and evolution of thermophilic adaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Three-dimensional computation of atom depth in complex molecular structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Recent progress towards the application of hyperthermophiles and their enzymes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Voronoi and Voronoi-related tessellations in studies of protein structure and interaction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Optimized electrostatic surfaces parallel increased thermostability: a structural bioinformatic analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Atom depth in protein structure and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
New understandings of thermostable and peizostable enzymes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
A graph-theory algorithm for rapid protein side-chain prediction
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
High-resolution structure of human phosphoserine phosphatase in open conformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Atom depth as a descriptor of the protein interior
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Selection of mutations for increased protein stability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
An NMR approach to structural proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Ion pairs and the thermotolerance of proteins from hyperthermophiles: a "traffic rule" for hot roads
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Are proteins well-packed?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
The habitat and nature of early life
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
The Protein Data Bank
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Structural distribution of stability in a thermophilic enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Residue depth: a novel parameter for the analysis of protein structure and stability.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
The packing density in proteins: standard radii and volumes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Electrostatic contributions to the stability of hyperthermophilic proteins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Protein folding: the endgame
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Packing at the protein-water interface
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
The interpretation of protein structures: Total volume, group volume distributions and packing density
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
20 June 2018
Building alternate protein structures using the elastic network model.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Using a strategy based on the concept of convergent evolution to identify residue substitutions responsible for thermal adaptation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Fold recognition by concurrent use of solvent accessibility and residue depth
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Bioinformatics-driven, rational engineering of protein thermostability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Travel depth, a new shape descriptor for macromolecules: application to ligand binding.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Network Analysis of Protein Structures Identifies Functional Residues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
DPX: for the analysis of the protein core
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Hydrothermal circulation of seawater through hot vents and contribution of interface chemistry to prebiotic synthesis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Structural and Genomic Correlates of Hyperthermostability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Proteins from thermophilic and mesophilic organisms essentially do not differ in packing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Protein thermal stability: hydrogen bonds or internal packing?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3383796
retrieved
26 November 2018
What is the natural boundary of a protein in solution?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19731381
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Recognizing native folds by the arrangement of hydrophobic and polar residues
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19731381
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Protein thermal stability, hydrogen bonds, and ion pairs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19731381
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1002/PROT.22558
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
PMC publication ID
3383796
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
PubMed publication ID
19731381
1 reference
stated in
Europe PubMed Central
PMC publication ID
3383796
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19731381%20AND%20SRC:MED&resulttype=core&format=json
retrieved
6 February 2020
ResearchGate publication ID
26790496
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit