(Q30381353)

20 August 2017

Structural relationships among proteins with different global topologies and their implications for function annotation strategies (English)

1 reference

20 August 2017

Donald Petrey

1

1 reference

20 August 2017

Markus Fischer

series ordinal

2

1 reference

20 August 2017

Barry Honig

series ordinal

3

1 reference

20 August 2017

language of work or name

English

0 references

publication date

24 September 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

20 August 2017

1 reference

20 August 2017

106

1 reference

20 August 2017

41

1 reference

20 August 2017

17377-17382

1 reference

Is protein classification necessary? Toward alternative approaches to function annotation

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Cradle-loop barrels and the concept of metafolds in protein classification by natural descent.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

20 June 2018

A folding space odyssey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Transitive homology-guided structural studies lead to discovery of Cro proteins with 40% sequence identity but different folds

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Evolutionary transitions in protein fold space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

SISYPHUS--structural alignments for proteins with non-trivial relationships

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Evolution of protein fold in the presence of functional constraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

On the origin and highly likely completeness of single-domain protein structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

On the nature of cavities on protein surfaces: application to the identification of drug-binding sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Crystal structures of a multifunctional triterpene/flavonoid glycosyltransferase from Medicago truncatula

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Less is more: towards an optimal universal description of protein folds.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Connecting the protein structure universe by using sparse recurring fragments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Functional annotation by identification of local surface similarities: a novel tool for structural genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

ProFunc: a server for predicting protein function from 3D structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Inference of protein function from protein structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Secondary structure switching in Cro protein evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

SCOP database in 2004: refinements integrate structure and sequence family data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

The CATH database: an extended protein family resource for structural and functional genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Expanding protein universe and its origin from the biological Big Bang

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Fold change in evolution of protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

An alternative view of protein fold space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Recognition of spatial motifs in protein structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Supersites within superfolds. Binding site similarity in the absence of homology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Relation between structure and function of alpha/beta-proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2765090

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

The PDB is a covering set of small protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

Structural diversity of domain superfamilies in the CATH database

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

Structural drift: a possible path to protein fold change

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

FSSA: a novel method for identifying functional signatures from structural alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

Inferring functional relationships of proteins from local sequence and spatial surface patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0907971106

21 January 2018

Identifiers

DOI

10.1073/PNAS.0907971106

1 reference

20 August 2017

0 references

1 reference

20 August 2017

PubMed publication ID

19805138

1 reference