(Q43749943)

26 November 2017

Inferring functional relationships of proteins from local sequence and spatial surface patterns (English)

1 reference

26 November 2017

T Andrew Binkowski

1

1 reference

26 November 2017

Larisa Adamian

series ordinal

2

1 reference

26 November 2017

Jie Liang

series ordinal

3

1 reference

26 November 2017

language of work or name

English

0 references

publication date

1 September 2003

1 reference

Journal of Molecular Biology

26 November 2017

1 reference

26 November 2017

332

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26 November 2017

505-526

1 reference

26 November 2017

2

1 reference

The Protein Data Bank: a computer-based archival file for macromolecular structures

26 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

CATH--a hierarchic classification of protein domain structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Protein structure alignment by incremental combinatorial extension (CE) of the optimal path

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Mapping the protein universe

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Evolution of function in protein superfamilies, from a structural perspective.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

New structure--novel fold?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Protein folds and functions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

From protein structure to function.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

The CATH Database provides insights into protein structure/function relationships.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Supersites within superfolds. Binding site similarity in the absence of homology.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Practical limits of function prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A graph-theoretic approach to the identification of three-dimensional patterns of amino acid side-chains in protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Surface motifs by a computer vision technique: searches, detection, and implications for protein-ligand recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Molecular surface recognition by a computer vision-based technique.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

TESS: a geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Detection of protein three-dimensional side-chain patterns: new examples of convergent evolution.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A model for statistical significance of local similarities in structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A new method to detect related function among proteins independent of sequence and fold homology.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Thirty-plus functional families from a single motif

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A homology identification method that combines protein sequence and structure information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Analysis and prediction of the location of catalytic residues in enzymes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

On the definition and the construction of pockets in macromolecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Analytical shape computation of macromolecules: II. Inaccessible cavities in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

CASTp: Computed Atlas of Surface Topography of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Areas, volumes, packing and protein structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Structural invariants in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

An analysis of packing in the protein folding problem

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Are proteins well-packed?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Universality and cluster structures in continuum models of percolation with two different radius distributions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

The union of balls and its dual shape

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Selection of representative protein data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Analysis of catalytic residues in enzyme active sites.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Empirical statistical estimates for sequence similarity searches.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Amino acid substitution matrices from protein blocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Local alignment statistics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Least-squares estimation of transformation parameters between two point patterns

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A solution for the best rotation to relate two sets of vectors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Fast detection of common geometric substructure in proteins.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Primary structure of Torpedo californica acetylcholinesterase deduced from its cDNA sequence.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Crystal structure of an Hsp90-geldanamycin complex: targeting of a protein chaperone by an antitumor agent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Crystal structures of Paracoccus denitrificans aromatic amino acid aminotransferase: a substrate recognition site constructed by rearrangement of hydrogen bond network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

The active site of Paracoccus denitrificans aromatic amino acid aminotransferase has contrary properties: flexibility and rigidity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Enhanced functional annotation of protein sequences via the use of structural descriptors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A structural census of the current population of protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

On the prediction of protein structure: The significance of the root-mean-square deviation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Amino acid substitution matrices from an information theoretic perspective

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

Gene ontology: tool for the unification of biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900882-9

10.1016/S0022-2836(03)00882-9

7 January 2021

Identifiers

DOI

1 reference

26 November 2017

1 reference