(Q48007992)

7 February 2018

title

Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation (English)

1 reference

7 February 2018

author name string

Motonori Ota

series ordinal

1

1 reference

7 February 2018

Kengo Kinoshita

series ordinal

2

1 reference

7 February 2018

Ken Nishikawa

series ordinal

3

1 reference

7 February 2018

language of work or name

English

0 references

publication date

1 April 2003

1 reference

7 February 2018

Journal of Molecular Biology

number of pages

12

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

7 February 2018

volume

327

1 reference

7 February 2018

issue

5

1 reference

7 February 2018

page(s)

1053-1064

1 reference

7 February 2018

Analysis and prediction of the location of catalytic residues in enzymes.

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

A method to predict functional residues in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

An evolutionary trace method defines binding surfaces common to protein families

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Analysis and prediction of functional sub-types from protein sequence alignments.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Inference of functional regions in proteins by quantification of evolutionary constraints

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Effect of active site residues in barnase on activity and stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Dependence of conformational stability on hydrophobicity of the amino acid residue in a series of variant proteins substituted at a unique position of tryptophan synthase alpha subunit

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

A relationship between protein stability and protein function

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Structural requirement of highly-conserved residues in globins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Desk-top analysis of the structural stability of various point mutations introduced into ribonuclease H.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Knowledge-based potential defined for a rotamer library to design protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Electrostatic aspects of protein-protein interactions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Prediction of functionally important residues based solely on the computed energetics of protein structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Structural genomics: beyond the human genome project

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Expectations from structural genomics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

The classification of amino acid conservation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Assessment of pseudo-energy potentials by the best-five test: a new use of the three-dimensional profiles of proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Strong hydrophobic nature of cysteine residues in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Protein secondary structure prediction using nearest-neighbor methods.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

7 January 2021

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

SCOP: a structural classification of proteins database for the investigation of sequences and structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

The relationship between protein structure and function: a comprehensive survey with application to the yeast genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Supersites within superfolds. Binding site similarity in the absence of homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Lysine-69 plays a key role in catalysis by ornithine decarboxylase through acceleration of the Schiff base formation, decarboxylation, and product release steps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Characterization of vitelline membrane outer layer protein I, VMO-I: amino acid sequence and structural stability

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Mapping the protein universe

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Multi-class protein fold recognition using support vector machines and neural networks.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Structure of cobalt carbonic anhydrase complexed with bicarbonate

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Dimethylsulfoxide reductase: an enzyme capable of catalysis with either molybdenum or tungsten at the active site

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Thermal stability of Escherichia coli ribonuclease HI and its active site mutants in the presence and absence of the Mg2+ ion. Proposal of a novel catalytic role for Glu48

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Detection of protein 3D-1D compatibility characterized by the evaluation of side-chain packing and electrostatic interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Protein stability for single substitution mutants and the extent of local compactness in the denatured state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Solvent-accessible surfaces of proteins and nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

Identification of protein functions from a molecular surface database, eF-site.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900207-9

10.1016/S0022-2836(03)00207-9

7 January 2021

Identifiers

DOI

1 reference

7 February 2018

1 reference

7 February 2018