(Q30397158)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Dynamics of a myoglobin mutant enzyme: 2D IR vibrational echo experiments and simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

author name string

Sayan Bagchi

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

Roger F Loring

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

language of work or name

English

0 references

publication date

8 December 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

Journal of the American Chemical Society

17 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

volume

132

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

issue

51

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

page(s)

18367-18376

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

Conformational switching between protein substates studied with 2D IR vibrational echo spectroscopy and molecular dynamics simulations

17 January 2020

cites work

1 reference

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Structural assignment of spectra by characterization of conformational substates in bound MbCO.

20 June 2018

1 reference

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Native and unfolded cytochrome c--comparison of dynamics using 2D-IR vibrational echo spectroscopy

20 June 2018

1 reference

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Direct observation of fast protein conformational switching

20 June 2018

1 reference

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Xenon in and at the end of the tunnel of bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase

20 June 2018

1 reference

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Disulfide bond influence on protein structural dynamics probed with 2D-IR vibrational echo spectroscopy

20 June 2018

1 reference

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Neuroglobin dynamics observed with ultrafast 2D-IR vibrational echo spectroscopy.

20 June 2018

1 reference

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Molecular dynamics simulation of deoxy and carboxy murine neuroglobin in water.

20 June 2018

1 reference

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Substrate binding and protein conformational dynamics measured by 2D-IR vibrational echo spectroscopy

20 June 2018

1 reference

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Comparison of multiple Amber force fields and development of improved protein backbone parameters

20 June 2018

1 reference

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Dynamics of proteins encapsulated in silica sol-gel glasses studied with IR vibrational echo spectroscopy

20 June 2018

1 reference

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The influence of aqueous versus glassy solvents on protein dynamics: vibrational echo experiments and molecular dynamics simulations.

20 June 2018

1 reference

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Dynamics of water probed with vibrational echo correlation spectroscopy

20 June 2018

1 reference

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Unveiling functional protein motions with picosecond x-ray crystallography and molecular dynamics simulations

20 June 2018

1 reference

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Myoglobin cavities provide interior ligand pathway.

20 June 2018

1 reference

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Myoglobin-CO Substate Structures and Dynamics: Multidimensional Vibrational Echoes and Molecular Dynamics Simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Engineering peroxidase activity in myoglobin: the haem cavity structure and peroxide activation in the T67R/S92D mutant and its derivative reconstituted with protohaemin-l-histidine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Myoglobin: the hydrogen atom of biology and a paradigm of complexity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Myoglobin-CO conformational substate dynamics: 2D vibrational echoes and MD simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Influence of the heme pocket conformation on the structure and vibrations of the Fe-CO bond in myoglobin: a QM/MM density functional study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Fast protein dynamics probed with infrared vibrational echo experiments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

The role of structure, energy landscape, dynamics, and allostery in the enzymatic function of myoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Connection between the taxonomic substates and protonation of histidines 64 and 97 in carbonmonoxy myoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Computer simulations of carbon monoxide photodissociation in myoglobin: structural interpretation of the B states.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Crystal structure of horseradish peroxidase C at 2.15 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Theoretical study of the electrostatic and steric effects on the spectroscopic characteristics of the metal-ligand unit of heme proteins. 2. C-O vibrational frequencies, 17O isotropic chemical shifts, and nuclear quadrupole coupling constants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Theoretical study of the distal-side steric and electrostatic effects on the vibrational characteristics of the FeCO unit of the carbonylheme proteins and their models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Crystal structures of CO-, deoxy- and met-myoglobins at various pH values

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Structural determinants of the stretching frequency of CO bound to myoglobin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Femtosecond measurements of geminate recombination in heme proteins

20 June 2018

1 reference

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Dynamic protein structures: infrared evidence for four discrete rapidly interconverting conformers at the carbon monoxide binding site of bovine heart myoglobin

20 June 2018

1 reference

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Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Rebinding and relaxation in the myoglobin pocket

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Resonance raman investigations of site-directed mutants of myoglobin: effects of distal histidine replacement.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Conformational substates and motions in myoglobin. External influences on structure and dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

The Energy Landscapes and Motions of Proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Conformational interconversion in protein crystals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Structure of carboxymyoglobin in crystals and in solution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Vibrational echo correlation spectroscopy probes of hydrogen bond dynamics in water and methanol

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Taking apart the two-dimensional infrared vibrational echo spectra: more information and elimination of distortions

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: a new approach

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Ultrafast two-dimensional infrared vibrational echo chemical exchange experiments and theory

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Ultrafast dynamics of myoglobin without the distal histidine: stimulated vibrational echo experiments and molecular dynamics simulations

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Stochastic Liouville equations for hydrogen-bonding fluctuations and their signatures in two-dimensional vibrational spectroscopy of water.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Non-Gaussian statistics of amide I mode frequency fluctuation of N-methylacetamide in methanol solution: linear and nonlinear vibrational spectra

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Characterizing global substates of myoglobin

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Determination of the carbon monoxide binding constants of myoglobin mutants: comparison of kinetic and equilibrium methods

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3033732

Time scales and optical dephasing measurements: Investigation of dynamics in complex systems

26 November 2018

1 reference

12 December 2020

Probing dynamics of complex molecular systems with ultrafast 2D IR vibrational echo spectroscopy

1 reference

12 December 2020

Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin

1 reference

12 December 2020

Vibrational anharmonicities revealed by coherent two-dimensional infrared spectroscopy

1 reference

12 December 2020

Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin

1 reference

12 December 2020

Probing heme protein conformational equilibration rates with kinetic selection

1 reference

12 December 2020

Dynamic protein structures. Effects of pH on conformer stabilities at the ligand-binding site of bovine heart myoglobin carbonyl

1 reference

12 December 2020

Vibrational Echo Studies of Protein Dynamics

1 reference

12 December 2020

Investigations of ligand association and dissociation rates in the "open" and "closed" states of myoglobin

1 reference

12 December 2020

Solvent mobility and the protein 'glass' transition

1 reference

12 December 2020

Ligand binding to heme proteins: the effect of light on ligand binding in myoglobin

1 reference

12 December 2020

Vibrational sum-frequency spectroscopy of the liquid/vapor interface for dilute HOD in D(2)O

1 reference

12 December 2020

A chemometric analysis of the resonance Raman spectra of mutant carbonmonoxy-myoglobins reveals the effects of polarity

1 reference

12 December 2020

Geminate recombination of carbon monoxide to myoglobin

1 reference

12 December 2020

Identifiers

DOI

10.1021/JA108491T

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21142083%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

PubMed publication ID

21142083

1 reference