(Q30402630)

21 June 2017

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title

The imprint of codons on protein structure (English)

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21 June 2017

Rhodri Saunders

2

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Charlotte Deane

object named as

Charlotte M Deane

series ordinal

1

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language of work or name

1 reference

13 May 2011

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21 June 2017

published in

Biotechnology Journal

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21 June 2017

volume

6

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21 June 2017

issue

6

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21 June 2017

page(s)

641-649

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A single-nucleotide synonymous mutation in the gag gene controlling human immunodeficiency virus type 1 virion production

21 June 2017

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A "silent" polymorphism in the MDR1 gene changes substrate specificity

21 January 2018

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Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

21 January 2018

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CASP8 results in context of previous experiments

21 January 2018

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Co-translational Folding of an Eukaryotic Multidomain Protein in a Prokaryotic Translation System

21 January 2018

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Protein folding on the ribosome

21 January 2018

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Modelling sequential protein folding under kinetic control.

21 January 2018

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The protein folding 'speed limit'.

21 January 2018

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Folding at the birth of the nascent chain: coordinating translation with co-translational folding

21 January 2018

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Directionality in protein fold prediction

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201000329

Protein structure prediction begins well but ends badly.

21 January 2018

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Cotranslational protein folding--fact or fiction?

21 January 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

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The relationship between synonymous codon usage and protein structure

21 January 2018

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Studies on the relationships between the synonymous codon usage and protein secondary structural units

21 January 2018

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Protein secondary structural types are differentially coded on messenger RNA.

21 January 2018

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Nonuniform size distribution of nascent globin peptides, evidence for pause localization sites, and a cotranslational protein-folding model

21 January 2018

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Rare codon content affects the solubility of recombinant proteins in a codon bias-adjusted Escherichia coli strain.

21 January 2018

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Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

21 January 2018

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Causes for the intriguing presence of tRNAs in phages

21 January 2018

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Translation rates of individual codons are not correlated with tRNA abundances or with frequencies of utilization in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1002%2FBIOT.201000329

Synonymous codon usage influences the local protein structure observed

21 January 2018

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Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

21 January 2018

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Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else?

21 January 2018

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Ribosome-mediated translational pause and protein domain organization

21 January 2018

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An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data

21 January 2018

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Translationally optimal codons associate with structurally sensitive sites in proteins

21 January 2018

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Indications that "codon boundaries" are physico-chemically defined and that protein-folding information is contained in the redundant exon bases

21 January 2018

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The folding of the bifunctional TRP3 protein in yeast is influenced by a translational pause which lies in a region of structural divergence with Escherichia coli indoleglycerol-phosphate synthase.

21 January 2018

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Unusual effect of clusters of rare arginine (AGG) codons on the expression of human interferon alpha 1 gene in Escherichia coli.

21 January 2018

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Silent mutations affect in vivo protein folding in Escherichia coli

21 January 2018

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A pause for thought along the co-translational folding pathway

21 January 2018

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Folding at the rhythm of the rare codon beat

21 January 2018

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Context-dependent codon bias and messenger RNA longevity in the yeast transcriptome.

21 January 2018

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Silent mutations result in HlyA hypersecretion by reducing intracellular HlyA protein aggregates

21 January 2018

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Transient ribosomal attenuation coordinates protein synthesis and co-translational folding.

21 January 2018

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Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis

21 January 2018

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Genetics. SNPs, silent but not invisible.

21 January 2018

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Circular permutations of protein sequence: not so rare?

21 January 2018

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21 January 2018

The EMBL data library

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The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

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Process development and analysis of liver-stage antigen 1, a preerythrocyte-stage protein-based vaccine for Plasmodium falciparum

21 January 2018

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Design of high-throughput methods of protein production for structural biology

21 January 2018

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ISSD Version 2.0: taxonomic range extended

21 January 2018

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Statistical correlation between protein secondary structure and messenger RNA stem-loop structure

21 January 2018

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GTOP: a database of protein structures predicted from genome sequences

21 January 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

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Twilight zone of protein sequence alignments

21 January 2018

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 January 2018

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21 January 2018

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Protein structure and the sequential structure of mRNA: alpha-helix and beta-sheet signals at the nucleotide level

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Tracing specific synonymous codon-secondary structure correlations through evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

The secondary structure of mRNAs from Escherichia coli: its possible role in increasing the accuracy of translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Translation efficiencies of synonymous codons for arginine differ dramatically and are not correlated with codon usage in chloroplasts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Queueing phase transition: theory of translation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Structured mRNAs regulate translation initiation by binding to the platform of the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Protein folding requires crowd control in a simulated cell.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Structure of the 70S ribosome complexed with mRNA and tRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

JOY: protein sequence-structure representation and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

Exonic Splicing Regulatory Elements Skew Synonymous Codon Usage near Intron-exon Boundaries in Mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201000329

21 January 2018

Identifiers

DOI

10.1002/BIOT.201000329

1 reference

21 June 2017

1 reference