(Q30403366)

21 June 2017

title

Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution (English)

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21 June 2017

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1

Aare Abroi

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21 June 2017

2

Julian Gough

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21 June 2017

language of work or name

English

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publication date

1 June 2011

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21 June 2017

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21 June 2017

volume

33

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21 June 2017

issue

8

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21 June 2017

page(s)

626-635

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The 1.2-megabase genome sequence of Mimivirus

21 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The virophage as a unique parasite of the giant mimivirus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Mimivirus: the emerging paradox of quasi-autonomous viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Importance of widespread gene transfer agent genes in alpha-proteobacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Here a virus, there a virus, everywhere the same virus?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Viruses manipulate the marine environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Marine viruses--major players in the global ecosystem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

New dimensions of the virus world discovered through metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Photosynthesis genes in marine viruses yield proteins during host infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Photosystem I gene cassettes are present in marine virus genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Ten good reasons not to exclude giruses from the evolutionary picture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Reasons to include viruses in the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Compelling reasons why viruses are relevant for the origin of cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Viral genomes are part of the phylogenetic tree of life.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Six comments on the ten reasons for the demotion of viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

There is no such thing as a tree of life (and of course viruses are out!).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

21 January 2018

The origin of viruses

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Viruses are essential agents within the roots and stem of the tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Virology in the 21st century

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Endogenous non-retroviral RNA virus elements in mammalian genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The evolution of novel fungal genes from non-retroviral RNA viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Endogenous viral elements in animal genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Rates of evolutionary change in viruses: patterns and determinants

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Extremely high mutation rate of a hammerhead viroid

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The evolutionary dynamics of bluetongue virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The prehistory of potyviruses: their initial radiation was during the dawn of agriculture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The evolutionary biology of poxviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Bluetongue virus evolution: Sequence analyses of the genomic S1 segments and major core protein VP7

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Analysis of host-parasite incongruence in papillomavirus evolution using importance sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Mutation rates in mammalian genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Origins and evolution of modern biochemistry: insights from genomes and molecular structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The origin, evolution and structure of the protein world.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Genomic and structural aspects of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Nature of the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The Universal Protein Resource (UniProt) in 2010

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The Pfam protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

I-TASSER server for protein 3D structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Evaluation of template-based models in CASP8 with standard measures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Fast and accurate automatic structure prediction with HHpred.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The ancient Virus World and evolution of cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Friendly viruses: the special relationship between endogenous retroviruses and their host

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Sequences from Ancestral Single-Stranded DNA Viruses in Vertebrate Genomes: the Parvoviridae and Circoviridae Are More than 40 to 50 Million Years Old

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Discovery and characterization of mammalian endogenous parvoviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Phylogeny determined by protein domain content

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Do viruses form lineages across different domains of life?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

What does structure tell us about virus evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Translationally optimal codons associate with structurally sensitive sites in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Probing the "dark matter" of protein fold space.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Discrete-continuous duality of protein structure space.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

Structure is three to ten times more conserved than sequence-A study of structural response in protein cores

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201000126

21 January 2018

Identifiers

DOI

10.1002/BIES.201000126

1 reference

21 June 2017

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