(Q30404734)

English

Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma.

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Validation of Next-Generation Sequencing of Entire Mitochondrial Genomes and the Diversity of Mitochondrial DNA Mutations in Oral Squamous Cell Carcinoma (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

mitochondrial DNA

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inferred from title

Christian W Huck

13

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

Hansi Weißensteiner

2

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22 February 2020

5

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22 February 2020

4

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Georg Schäfer

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22 February 2020

author name string

Anita Kloss-Brandstätter

1

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22 February 2020

Gertraud Erhart

3

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22 February 2020

Sebastian Schönherr

6

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22 February 2020

Dominic Pacher

7

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22 February 2020

Christof Seifarth

8

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22 February 2020

Andrea Stöckl

9

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22 February 2020

Liane Fendt

10

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22 February 2020

Irma Sottsas

11

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22 February 2020

Helmut Klocker

12

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22 February 2020

Michael Rasse

14

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22 February 2020

Florian Kronenberg

15

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22 February 2020

Frank R Kloss

16

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22 February 2020

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11 August 2015

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22 February 2020

1 reference

Europe PubMed Central

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22 February 2020

10

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

8

1 reference

Europe PubMed Central

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22 February 2020

e0135643

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

copyright license

Creative Commons Attribution 4.0 International

11 August 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Evidence for frequent and tissue-specific sequence heteroplasmy in human mitochondrial DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Notch1 mutations are drivers of oral tumorigenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Unambiguous detection of multiple TP53 gene mutations in AAN-associated urothelial cancer in Belgium using laser capture microdissection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mutational patterns in the breast cancer mitochondrial genome, with clinical correlates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Recurrent tissue-specific mtDNA mutations are common in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mitochondrial DNA genetics and the heteroplasmy conundrum in evolution and disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Frequency and pattern of heteroplasmy in the complete human mitochondrial genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Concept for estimating mitochondrial DNA haplogroups using a maximum likelihood approach (EMMA)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Tissue-specific mitochondrial heteroplasmy at position 16,093 within the same individual

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Clinical significance in oral cavity squamous cell carcinoma of pathogenic somatic mitochondrial mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mitochondrial DNA copy number and risk of oral cancer: a report from Northeast India.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Universal heteroplasmy of human mitochondrial DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Variation in germline mtDNA heteroplasmy is determined prenatally but modified during subsequent transmission

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Cloudgene: a graphical execution platform for MapReduce programs on private and public clouds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mitochondrial DNA heteroplasmy in diabetes and normal adults: role of acquired and inherited mutational patterns in twins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

A combined functional annotation score for non-synonymous variants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Improving the assessment of the outcome of nonsynonymous SNVs with a consensus deleteriousness score, Condel.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mitochondrial DNA mutations in head and neck cancer are infrequent and lack prognostic utility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Improving SNP discovery by base alignment quality

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Somatic mutations throughout the entire mitochondrial genome are associated with elevated PSA levels in prostate cancer patients.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

A compendium of human mitochondrial gene expression machinery with links to disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

A method and server for predicting damaging missense mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Revision of the mtDNA tree and corresponding haplogroup nomenclature

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

eCOMPAGT integrates mtDNA: import, validation and export of mitochondrial DNA profiles for population genetics, tumour dynamics and genotype-phenotype association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Heteroplasmic mitochondrial DNA mutations in normal and tumour cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

A mechanistic view of human mitochondrial DNA polymerase gamma: providing insight into drug toxicity and mitochondrial disease

1 reference

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20 June 2018

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

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20 June 2018

Sexual behaviours and the risk of head and neck cancers: a pooled analysis in the International Head and Neck Cancer Epidemiology (INHANCE) consortium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Genetic and molecular alterations associated with oral squamous cell cancer (Review).

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20 June 2018

Detection of nonneutral substitution rates on mammalian phylogenies

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20 June 2018

Inferring relative proportions of DNA variants from sequencing electropherograms

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20 June 2018

Automated inference of molecular mechanisms of disease from amino acid substitutions.

1 reference

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20 June 2018

The Sequence Alignment/Map format and SAMtools

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20 June 2018

Correcting for purifying selection: an improved human mitochondrial molecular clock

1 reference

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20 June 2018

Disulfide formation in the ER and mitochondria: two solutions to a common process.

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20 June 2018

Mitochondrial DNA mutations in cancer: a review.

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20 June 2018

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

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20 June 2018

MITOMASTER: a bioinformatics tool for the analysis of mitochondrial DNA sequences

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4532422

20 June 2018

Mitochondrial DNA polymerase-gamma and human disease

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20 June 2018

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences

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20 June 2018

Field cancerization in oral stratified squamous epithelium; clinical implications of multicentric origin

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20 June 2018

Disparities in risk of and survival from oropharyngeal squamous cell carcinoma

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20 June 2018

A genetic explanation of Slaughter's concept of field cancerization: evidence and clinical implications

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20 June 2018

Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA

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20 June 2018

Statistical methods for assessing agreement between two methods of clinical measurement

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20 June 2018

Investigation of heteroplasmy in the human mitochondrial DNA control region: a synthesis of observations from more than 5000 global population samples

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135643

21 January 2018

Accumulation of mutations over the entire mitochondrial genome of breast cancer cells obtained by tissue microdissection.

1 reference

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21 January 2018

Transition to next generation analysis of the whole mitochondrial genome: a summary of molecular defects

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21 January 2018

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes

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21 January 2018

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups.

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21 January 2018

Phantom mutation hotspots in human mitochondrial DNA.

1 reference

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21 January 2018

Use of stereotypical mutational motifs to define resolution limits for the ultra-deep resequencing of mitochondrial DNA.

1 reference

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21 January 2018

Origins of human mitochondrial point mutations as DNA polymerase gamma-mediated errors.

1 reference

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21 January 2018

mtDNA tree Build 17 (18 Feb 2016)

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135643

21 January 2018

Cancerization of cutaneous flap reconstruction for oral squamous cell carcinoma: report of three cases studied with the mtDNA D-loop sequence analysis

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21 January 2018

Genetic relationship between multiple squamous cell carcinomas arising in the oral cavity

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0135643

21 January 2018

MitoTool: A web server for the analysis and retrieval of human mitochondrial DNA sequence variations

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21 January 2018

MitImpact: an exhaustive collection of pre-computed pathogenicity predictions of human mitochondrial non-synonymous variants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive one-step molecular analyses of mitochondrial genome by massively parallel sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Accumulation of mutations over the complete mitochondrial genome in tobacco-related oral cancer from northeast India

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of marginal and segmental mandibular resection on the survival rate in patients with squamous cell carcinoma of the inferior parts of the oral cavity

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exonucleolytic proofreading enhances the fidelity of DNA synthesis by chick embryo DNA polymerase-gamma

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Multiple head and neck tumors: evidence for a common clonal origin

1 reference

https://pubmed.ncbi.nlm.nih.gov/26262956

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0135643

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

2015PLoSO..1035643K

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26262956%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

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