(Q30405992)

13 September 2017

Coarse grained model for exploring voltage dependent ion channels (English)

1 reference

13 September 2017

4

Arieh Warshel

1 reference

13 September 2017

Anatoly Dryga

1

1 reference

13 September 2017

Suman Chakrabarty

series ordinal

2

1 reference

13 September 2017

Spyridon Vicatos

series ordinal

3

1 reference

13 September 2017

language of work or name

English

0 references

publication date

5 August 2011

1 reference

13 September 2017

15

1 reference

Biochimica et Biophysica Acta

inferred from page(s)

published in

1 reference

13 September 2017

1818

1 reference

13 September 2017

2

1 reference

13 September 2017

303-317

1 reference

Coarse-grained (multiscale) simulations in studies of biophysical and chemical systems

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

On the energetics of translocon-assisted insertion of charged transmembrane helices into membranes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Calculation of the gating charge for the Kv1.2 voltage-activated potassium channel

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Ketosteroid isomerase provides further support for the idea that enzymes work by electrostatic preorganization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Effective approach for calculations of absolute stability of proteins using focused dielectric constants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Atomic structure of a voltage-dependent K+ channel in a lipid membrane-like environment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Closing in on the resting state of the Shaker K(+) channel.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Modeling electrostatic effects in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Voltage-dependent capacitance of human embryonic kidney cells

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Crystal structure of a mammalian voltage-dependent Shaker family K+ channel

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

A quantitative assessment of models for voltage-dependent gating of ion channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Simulations of counterions at charged plates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Electrostatic model of S4 motion in voltage-gated ion channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Towards an understanding of complex biological membranes from atomistic molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Molecular dynamics simulations of biological reactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Simulation approaches to ion channel structure-function relationships

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Energetic optimization of ion conduction rate by the K+ selectivity filter

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

K(+)/Na(+) selectivity of the KcsA potassium channel from microscopic free energy perturbation calculations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Voltage-dependent insertion of alamethicin at phospholipid/water and octane/water interfaces

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Molecular dynamics of the KcsA K(+) channel in a bilayer membrane

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Ion permeation mechanism of the potassium channel

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Simulations of ion permeation through a potassium channel: molecular dynamics of KcsA in a phospholipid bilayer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Atomic scale movement of the voltage-sensing region in a potassium channel measured via spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Influence of the membrane potential on the free energy of an intrinsic protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Molecular basis of charge movement in voltage-gated sodium channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Inactivation properties of voltage-gated K+ channels altered by presence of beta-subunit

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Structure and function of voltage-gated ion channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Macroscopic models for studies of electrostatic interactions in proteins: limitations and applicability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Ionic selectivity revisited: The role of kinetic and equilibrium processes in ion permeation through channels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Calculations of electrostatic interactions in biological systems and in solutions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Ion transport through pores: A rate-theory analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

The electrostatic properties of membranes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Energetics of ion permeation through membrane channels. Solvation of Na+ by gramicidin A.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Effects of double-layer polarization on ion transport.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Multiscale simulations of protein landscapes: using coarse-grained models as reference potentials to full explicit models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Insights from theory and simulation on the electrical double layer.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Ion-ion correlation attraction in a molecular solvent

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Test of the Gouy-Chapman theory for a charged lipid membrane against explicit-solvent molecular dynamics simulations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Monte Carlo simulation of electrolytes in the constant voltage ensemble.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Electrostatic contributions to protein stability and folding energy

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Structure prediction for the down state of a potassium channel voltage sensor.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Using a charging coordinate in studies of ionization induced partial unfolding

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Exploring the origin of the ion selectivity of the KcsA potassium channel

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Simulations of ion current in realistic models of ion channels: the KcsA potassium channel

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Energetics of ion conduction through the K+ channel

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Water and potassium dynamics inside the KcsA K(+) channel

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Voltage-sensing residues in the S2 and S4 segments of the Shaker K+ channel

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Calculations of the spatial distribution of charge density in the environment of DNA.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232338

Electrical properties of bimolecular phospholipid membranes

26 November 2018

1 reference

12 December 2020

Interpretation of protein titration curves. Application to lysozyme

1 reference

12 December 2020

Electrical capacitance of a lipid membrane separating two aqueous phases

1 reference

12 December 2020

Phospholipids and the origin of cationic gating charges in voltage sensors

1 reference

12 December 2020

A voltage-sensor water pore

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Family of G protein alpha chains: amphipathic analysis and predicted structure of functional domains

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Monte Carlo Simulations of the Mechanism for Channel Selectivity: The Competition between Volume Exclusion and Charge Neutrality

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Monte Carlo, density functional theory, and Poisson–Boltzmann theory study of the structure of an electrolyte near an electrode

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

The membrane potential and its representation by a constant electric field in computer simulations

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Sur la constitution de la charge électrique à la surface d'un électrolyte

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Monte Carlo simulation of an ion-dipole mixture as a model of an electrical double layer

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.BBAMEM.2011.07.043

Identifiers

DOI

10.1016/J.BBAMEM.2011.07.043

1 reference

13 September 2017

1 reference

13 September 2017

PubMed publication ID

21843502

1 reference