(Q30407674)

10 September 2017

Multiple functions of aromatic-carbohydrate interactions in a processive cellulase examined with molecular simulation (English)

1 reference

10 September 2017

1

Christina M Payne

1 reference

10 September 2017

2

Yannick J Bomble

1 reference

10 September 2017

Clare McCabe

4

0 references

Michael E. Himmel

series ordinal

5

object named as

Michael E Himmel

1 reference

10 September 2017

Courtney B Taylor

3

1 reference

10 September 2017

Michael F Crowley

series ordinal

6

1 reference

10 September 2017

Gregg T Beckham

series ordinal

7

1 reference

10 September 2017

language of work or name

English

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publication date

29 September 2011

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10 September 2017

8

1 reference

Journal of Biological Chemistry

inferred from page(s)

published in

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10 September 2017

286

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10 September 2017

47

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10 September 2017

41028-41035

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Deconstruction of lignocellulosic biomass to fuels and chemicals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

CHARMM additive all-atom force field for carbohydrate derivatives and its utility in polysaccharide and carbohydrate-protein modeling.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Probing carbohydrate product expulsion from a processive cellulase with multiple absolute binding free energy methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Applications of computational science for understanding enzymatic deconstruction of cellulose

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Processivity of cellobiohydrolases is limited by the substrate.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

High speed atomic force microscopy visualizes processive movement of Trichoderma reesei cellobiohydrolase I on crystalline cellulose

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Processivity, synergism, and substrate specificity of Thermobifida fusca Cel6B.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Visualisation of cyclic and multi-branched molecules with VMD.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

CHARMM: the biomolecular simulation program

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Aromatic residues in the catalytic center of chitinase A from Serratia marcescens affect processivity, enzyme activity, and biomass converting efficiency

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Carbohydrate polymers at the center of life's origins: the importance of molecular processivity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Carbohydrate-pi interactions: what are they worth?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Effect of glycosylation on protein folding: a close look at thermodynamic stabilization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Additive empirical force field for hexopyranose monosaccharides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

How the walls come crumbling down: recent structural biochemistry of plant polysaccharide degradation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Automated docking to explore subsite binding by glycoside hydrolase family 6 cellobiohydrolases and endoglucanases.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

The conformational free energy landscape of beta-D-glucopyranose. Implications for substrate preactivation in beta-glucoside hydrolases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Siglecs and their roles in the immune system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

A simple model system for the study of carbohydrate--aromatic interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Biomass recalcitrance: engineering plants and enzymes for biofuels production

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Costs and benefits of processivity in enzymatic degradation of recalcitrant polysaccharides.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Sweet spots in functional glycomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Molecular recognition of saccharides by proteins. Insights on the origin of the carbohydrate-aromatic interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Importance of exposed aromatic residues in chitinase B from Serratia marcescens 2170 for crystalline chitin hydrolysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Mapping glycoside hydrolase substrate subsites by isothermal titration calorimetry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Carbohydrate-binding modules: fine-tuning polysaccharide recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Chemical biology of the sugar code

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Engineering the exo-loop of Trichoderma reesei cellobiohydrolase, Cel7A. A comparison with Phanerochaete chrysosporium Cel7D

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Aromatic residues within the substrate-binding cleft of Bacillus circulans chitinase A1 are essential for hydrolysis of crystalline chitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

The binding specificity and affinity determinants of family 1 and family 3 cellulose binding modules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Clusters, bundles, arrays and lattices: novel mechanisms for lectin-saccharide-mediated cellular interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

The active site of cellobiohydrolase Cel6A from Trichoderma reesei: the roles of aspartic acids D221 and D175

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Roles of the exposed aromatic residues in crystalline chitin hydrolysis by chitinase A from Serratia marcescens 2170.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Protein--carbohydrate interactions: learning lessons from nature.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Structure of a two-domain chitotriosidase from Serratia marcescens at 1.9-A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Structure and function of Humicola insolens family 6 cellulases: structure of the endoglucanase, Cel6B, at 1.6 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Imaging the enzymatic digestion of bacterial cellulose ribbons reveals the endo character of the cellobiohydrolase Cel6A from Humicola insolens and its mode of synergy with cellobiohydrolase Cel7A.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Crystallographic evidence for substrate ring distortion and protein conformational changes during catalysis in cellobiohydrolase Ce16A from trichoderma reesei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Evolutionary considerations in relating oligosaccharide diversity to biological function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Tryptophan 272: an essential determinant of crystalline cellulose degradation by Trichoderma reesei cellobiohydrolase Cel6A.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Carbohydrate recognition systems: functional triads in cell-cell interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Structural basis of lectin-carbohydrate recognition

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

The three-dimensional crystal structure of the catalytic core of cellobiohydrolase I from Trichoderma reesei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Three-dimensional structure of cellobiohydrolase II from Trichoderma reesei

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Stereochemical course of hydrolysis and hydration reactions catalysed by cellobiohydrolases I and II from Trichoderma reesei.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3220501

Enthalpic nature of the CH/pi interaction involved in the recognition of carbohydrates by aromatic compounds, confirmed by a novel interplay of NMR, calorimetry, and theoretical calculations

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Aromatic-carbohydrate interactions: an NMR and computational study of model systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Surface plasmon resonance imaging studies of protein-carbohydrate interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Identification of amino acids responsible for processivity in a Family 1 carbohydrate-binding module from a fungal cellulase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Examination of the α-chitin structure and decrystallization thermodynamics at the nanoscale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Techniques for visualization of carbohydrate molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Puckering coordinates of monocyclic rings by triangular decomposition.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Quantum Mechanics/Molecular Mechanics Modeling of Substrate-Assisted Catalysis in Family 18 Chitinases: Conformational Changes and the Role of Asp142 in Catalysis in ChiB

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Determination of substrate binding energies in individual subsites of a family 18 chitinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Restructuring the Crystalline Cellulose Hydrogen Bond Network Enhances Its Depolymerization Rate

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.297713

Mechanism of initial rapid rate retardation in cellobiohydrolase catalyzed cellulose hydrolysis

21 January 2018

1 reference

12 December 2020

Cellulase digestibility of pretreated biomass is limited by cellulose accessibility

1 reference

12 December 2020

Computational simulations of the Trichoderma reesei cellobiohydrolase I acting on microcrystalline cellulose Ibeta: the enzyme-substrate complex

1 reference

12 December 2020

Lectins: Carbohydrate-Specific Proteins That Mediate Cellular Recognition

1 reference

12 December 2020

Molecular-level origins of biomass recalcitrance: decrystallization free energies for four common cellulose polymorphs

1 reference

12 December 2020

Evaluation of a carbohydrate-pi interaction in a peptide model system

1 reference

12 December 2020

Glycoarrays—tools for determining protein–carbohydrate interactions and glycoenzyme specificity

1 reference

12 December 2020

Conformational analysis of the anomeric forms of sophorose, laminarabiose, and cellobiose using MM3

1 reference

12 December 2020

IR-spectral signatures of aromatic-sugar complexes: probing carbohydrate-protein interactions

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.297713

1 reference

10 September 2017

1 reference

10 September 2017

PubMed publication ID

21965672

1 reference