(Q30417506)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

title

DR_bind: a web server for predicting DNA-binding residues from the protein structure based on electrostatics, evolution and geometry (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

0 references

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

author name string

Yao Chi Chen

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

Jon D Wright

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

language of work or name

English

0 references

publication date

31 May 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

volume

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

issue

Web Server issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

page(s)

W249-56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

3 February 2020

copyright license

start time

5 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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1 reference

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A structural-alphabet-based strategy for finding structural motifs across protein families.

20 June 2018

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BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features

20 June 2018

1 reference

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NAPS: a residue-level nucleic acid-binding prediction server

20 June 2018

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ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394278

DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394278

Prediction of DNA-binding residues from protein sequence information using random forests

20 June 2018

1 reference

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ProteDNA: a sequence-based predictor of sequence-specific DNA-binding residues in transcription factors

20 June 2018

1 reference

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Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature

20 June 2018

1 reference

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Common physical basis of macromolecule-binding sites in proteins

20 June 2018

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20 June 2018

1 reference

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A protein-DNA docking benchmark

20 June 2018

1 reference

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DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions

20 June 2018

1 reference

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Predicting RNA-binding sites from the protein structure based on electrostatics, evolution and geometry.

20 June 2018

1 reference

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20 June 2018

1 reference

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TDP43 is a human low molecular weight neurofilament (hNFL) mRNA-binding protein

20 June 2018

1 reference

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Predicting DNA-binding amino acid residues from electrostatic stabilization upon mutation to Asp/Glu and evolutionary conservation.

20 June 2018

1 reference

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20 June 2018

1 reference

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DP-Bind: a web server for sequence-based prediction of DNA-binding residues in DNA-binding proteins

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394278

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20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

1 reference

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20 June 2018

1 reference

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20 June 2018

1 reference

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20 June 2018

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20 June 2018

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20 June 2018

1 reference

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20 June 2018

1 reference

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Interior and surface of monomeric proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394278

Protein structure alignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3394278

Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information

20 June 2018

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Pattern recognition strategies for molecular surfaces: III. Binding site prediction with a neural network

21 January 2018

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https://api.crossref.org/works/10.1093%2FNAR%2FGKS481

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKS481

Structure-based prediction of DNA-binding sites on proteins using the empirical preference of electrostatic potential and the shape of molecular surfaces

21 January 2018

1 reference

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PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22661576

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The DNA-binding domain of p53 contains the four conserved regions and the major mutation hot spots

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22661576

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS481

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

DBLP publication ID

journals/nar/ChenWL12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

PubMed publication ID

22661576

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22661576%20AND%20SRC:MED&resulttype=core&format=json