(Q30420492)

21 June 2017

title

Structure-based identification and clustering of protein families and superfamilies (English)

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21 June 2017

2

Blundell TL

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21 June 2017

Rufino SD

1

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21 June 2017

publication date

1 February 1994

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Journal of Computer - Aided Molecular Design

21 June 2017

published in

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21 June 2017

volume

8

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21 June 2017

issue

1

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21 June 2017

page(s)

5-27

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Algorithm 457: finding all cliques of an undirected graph

21 June 2017

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FBF00124346

Construction of phylogenetic trees

21 January 2018

1 reference

12 December 2020

Structure of recombinant human renin, a target for cardiovascular-active drugs, at 2.5 A resolution

1 reference

12 December 2020

A holistic approach to protein structure alignment

1 reference

12 December 2020

Crystallographic analysis of a complex between human immunodeficiency virus type 1 protease and acetyl-pepstatin at 2.0-A resolution

1 reference

12 December 2020

The three-dimensional structure of recombinant bovine chymosin at 2.3 A resolution

1 reference

12 December 2020

Phylogenetic relationships from three-dimensional protein structures

1 reference

12 December 2020

Crystal structure analysis of auromomycin apoprotein (macromomycin) shows importance of protein side chains to chromophore binding selectivity

1 reference

12 December 2020

A variable gap penalty function and feature weights for protein 3-D structure comparisons

1 reference

12 December 2020

Evolution of proteins formed by beta-sheets. II. The core of the immunoglobulin domains

1 reference

12 December 2020

Knowledge-based prediction of protein structures and the design of novel molecules

1 reference

12 December 2020

Identification of tertiary structure resemblance in proteins using a maximal common subgraph isomorphism algorithm.

1 reference

12 December 2020

Globin fold in a bacterial toxin

1 reference

12 December 2020

X-ray analyses of aspartic proteinases. The three-dimensional structure at 2.1 A resolution of endothiapepsin

1 reference

12 December 2020

Structure of the L-leucine-binding protein refined at 2.4 A resolution and comparison with the Leu/Ile/Val-binding protein structure

1 reference

12 December 2020

Orthogonal beta beta motifs in proteins

1 reference

12 December 2020

The taxonomy of protein structure

1 reference

12 December 2020

Phosphofructokinase: structure and control

1 reference

12 December 2020

Structure of holo-glyceraldehyde-3-phosphate dehydrogenase from Bacillus stearothermophilus at 1.8 A resolution

1 reference

12 December 2020

A database of protein structure families with common folding motifs

1 reference

12 December 2020

Structure of porphobilinogen deaminase reveals a flexible multidomain polymerase with a single catalytic site

1 reference

12 December 2020

Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

1 reference

12 December 2020

Families and the structural relatedness among globular proteins

1 reference

12 December 2020

Structure of the aspartic protease from Rous sarcoma retrovirus refined at 2-A resolution

1 reference

12 December 2020

Protein sequence comparison: methods and significance

1 reference

12 December 2020

Identification and classification of protein fold families

1 reference

12 December 2020

Electron density calculations as an extension of protein structure refinement. Streptomyces griseus protease A at 1.5 A resolution

1 reference

12 December 2020

Crystal structure of Escherichia coli CheY refined at 1.7-A resolution

1 reference

12 December 2020

X-ray analyses of aspartic proteinases. II. Three-dimensional structure of the hexagonal crystal form of porcine pepsin at 2.3 A resolution

1 reference

12 December 2020

Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis

1 reference

12 December 2020

Confidence Limits on Phylogenies: an Approach using the Bootstrap

1 reference

12 December 2020

Periplasmic binding protein structure and function. Refined X-ray structures of the leucine/isoleucine/valine-binding protein and its complex with leucine

1 reference

12 December 2020

Knowledge based modelling of homologous proteins, Part II: Rules for the conformations of substituted sidechains

1 reference

12 December 2020

Comparison of protein structures

1 reference

12 December 2020

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

1 reference

12 December 2020

Structure of native porcine pancreatic elastase at 1.65 A resolutions

1 reference

12 December 2020

The 2.3-A resolution structure of the maltose- or maltodextrin-binding protein, a primary receptor of bacterial active transport and chemotaxis

1 reference

12 December 2020

A rapid method of protein structure alignment

1 reference

12 December 2020

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

12 December 2020

Exploring structural homology of proteins

1 reference

12 December 2020

Molecular recognition in protein families: a database of aligned three-dimensional structures of related proteins

1 reference

12 December 2020

A systematic approach to the comparison of protein structures

1 reference

12 December 2020

A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme

1 reference

12 December 2020

X-ray analyses of aspartic proteinases. V. Structure and refinement at 2.0 A resolution of the aspartic proteinase from Mucor pusillus

1 reference

12 December 2020

Analysis of protein sheet topologies by graph theoretical methods.

1 reference

12 December 2020

Structure of the semiquinone form of flavodoxin from Clostridum MP. Extension of 1.8 A resolution and some comparisons with the oxidized state

1 reference

12 December 2020

Molecular and active-site structure of a Bacillus 1,3-1,4-beta-glucanase

1 reference

12 December 2020

From comparisons of protein sequences and structures to protein modelling and design

1 reference

12 December 2020

Evolution of proteins formed by beta-sheets. I. Plastocyanin and azurin

1 reference

12 December 2020

Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography

1 reference

12 December 2020

A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme

1 reference

12 December 2020

Fast structure alignment for protein databank searching

1 reference

12 December 2020

Sugar and signal-transducer binding sites of the Escherichia coli galactose chemoreceptor protein

1 reference

12 December 2020

SETOR: hardware-lighted three-dimensional solid model representations of macromolecules

1 reference

12 December 2020

Structural determinants of the conformations of medium-sized loops in proteins

1 reference

12 December 2020

Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products

1 reference

12 December 2020

Protein structure comparison by alignment of distance matrices

1 reference

12 December 2020

Crystal structure of a retroviral protease proves relationship to aspartic protease family

1 reference

12 December 2020

A new approach to protein fold recognition

1 reference

12 December 2020

Comparative model-building of the mammalian serine proteases

1 reference

12 December 2020

An analysis of non-bonded energy of proteins

1 reference

12 December 2020

Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures

1 reference

12 December 2020

Use of techniques derived from graph theory to compare secondary structure motifs in proteins

1 reference

12 December 2020

A structural model for the retroviral proteases.

1 reference

12 December 2020

Gene duplications in the structural evolution of chymotrypsin

1 reference

12 December 2020

Molecular anatomy: phyletic relationships derived from three-dimensional structures of proteins

1 reference

12 December 2020

A fast method of comparing protein structures

1 reference

12 December 2020

1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli

1 reference

12 December 2020

Three-dimensional structure of CheY, the response regulator of bacterial chemotaxis

1 reference

12 December 2020

Three-dimensional structure of aspartyl protease from human immunodeficiency virus HIV-1

1 reference

12 December 2020

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

1 reference

12 December 2020

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

12 December 2020

Revised 2.3 A structure of porcine pepsin: evidence for a flexible subdomain

1 reference

12 December 2020

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1 reference

12 December 2020

X-ray analyses of aspartic proteinases. IV. Structure and refinement at 2.2 A resolution of bovine chymosin

1 reference

12 December 2020

Protein structure alignment

1 reference

12 December 2020

Structure of concanavalin A at 2.4-A resolution

1 reference

12 December 2020

Detection of common three-dimensional substructures in proteins

1 reference

12 December 2020

Recurring structural motifs in proteins with different functions

1 reference

12 December 2020

Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action

1 reference

12 December 2020

Novel stereospecificity of the L-arabinose-binding protein

1 reference

12 December 2020

Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

1 reference

12 December 2020

Structural resemblance between the families of bacterial signal-transduction proteins and of G proteins revealed by graph theoretical techniques

1 reference

12 December 2020

Refined structure of the complex between guanylate kinase and its substrate GMP at 2·0 Å resolution

1 reference

12 December 2020

The nature of the accessible and buried surfaces in proteins

1 reference

12 December 2020

X-ray analyses of peptide-inhibitor complexes define the structural basis of specificity for human and mouse renins

1 reference

12 December 2020

The crystal structure of pea lectin at 3.0-A resolution

1 reference

12 December 2020

Crystal structure of Escherichia coli malate dehydrogenase. A complex of the apoenzyme and citrate at 1.87 A resolution

1 reference

12 December 2020

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

1 reference

12 December 2020

Structure of human lactoferrin: crystallographic structure analysis and refinement at 2.8 A resolution

1 reference

12 December 2020

Conserved folding in retroviral proteases: crystal structure of a synthetic HIV-1 protease

1 reference

12 December 2020

Structural alignment of globins, phycocyanins and colicin A.

1 reference

12 December 2020

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

1 reference

12 December 2020

Identification of common molecular subsequences

1 reference

12 December 2020

Alignment and searching for common protein folds using a data bank of structural templates

1 reference

12 December 2020

X-ray analysis of HIV-1 proteinase at 2.7 A resolution confirms structural homology among retroviral enzymes

1 reference

12 December 2020

Three-dimensional structural resemblance between leucine aminopeptidase and carboxypeptidase A revealed by graph-theoretical techniques

1 reference

12 December 2020

Comparative protein modelling by satisfaction of spatial restraints

1 reference

12 December 2020

Identifiers

DOI

10.1007/BF00124346

1 reference

21 June 2017

DBLP publication ID

journals/jcamd/RufinoB94

1 reference

DBLP Dataset 2021-01-02

release_akue5t4htbatbekiz4y3em5p2e

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/akue5t4htbatbekiz4y3em5p2e

24 November 2022

mapped directly with Wikidata item

1 reference