(Q30431835)

17 August 2017

The FunFOLD2 server for the prediction of protein-ligand interactions (English)

1 reference

17 August 2017

0 references

Daniel B Roche

1

0 references

Liam J. McGuffin

object named as

Liam J McGuffin

series ordinal

3

0 references

author name string

Maria T Buenavista

series ordinal

2

1 reference

PMCID

3692132

17 August 2017

language of work or name

English

0 references

publication date

12 June 2013

1 reference

17 August 2017

Nucleic Acids Research

1 reference

17 August 2017

41

1 reference

17 August 2017

Web Server issue

1 reference

17 August 2017

W303-7

1 reference

Creative Commons Attribution 3.0 Unported

17 August 2017

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

FINDSITE(comb): a threading/structure-based, proteomic-scale virtual ligand screening approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Structure and evolution of barley powdery mildew effector candidates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

A novel non-canonical mechanism of regulation of MST3 (mammalian Sterile20-related kinase 3).

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Assessment of ligand-binding residue predictions in CASP9.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

firestar--advances in the prediction of functionally important residues

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

The binding site distance test score: a robust method for the assessment of predicted protein binding sites.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

3DLigandSite: predicting ligand-binding sites using similar structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

How significant is a protein structure similarity with TM-score = 0.5?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

INTREPID: a web server for prediction of functionally important residues by evolutionary analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

SITEHOUND-web: a server for ligand binding site identification in protein structures.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Outcome of a workshop on applications of protein models in biomedical research

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

firestar--prediction of functionally important residues using structural templates and alignment reliability

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

TM-align: a protein structure alignment algorithm based on the TM-score

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Improvement of 3D protein models using multiple templates guided by single-template model quality assessment.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

Proteogenomics and in silico structural and functional annotation of the barley powdery mildew Blumeria graminis f. sp. hordei

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3692132

26 November 2018

Identifiers

DOI

10.1093/NAR/GKT498

1 reference

17 August 2017

journals/nar/RocheBM13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

17 August 2017

1 reference

PMCID

3692132