(Q30434632)

English

The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins

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scholarly article

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Europe PubMed Central

PubMed publication ID

21 June 2017

The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins (English)

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

1 reference

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inferred from title

Andrzej Joachimiak

0 references

David R. Cooper

5

object named as

David R Cooper

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Europe PubMed Central

PubMed publication ID

21 June 2017

author name string

Yancho Devedjiev

1

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Europe PubMed Central

PubMed publication ID

21 June 2017

Yogesh Surendranath

2

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Urszula Derewenda

3

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Alexandra Gabrys

4

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Rong-guang Zhang

6

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Lour Lezondra

7

1 reference

Europe PubMed Central

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21 June 2017

Zygmunt S Derewenda

9

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Europe PubMed Central

PubMed publication ID

21 June 2017

language of work or name

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publication date

1 October 2004

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Europe PubMed Central

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21 June 2017

Journal of Molecular Biology

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Europe PubMed Central

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21 June 2017

343

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Europe PubMed Central

PubMed publication ID

21 June 2017

2

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

395-406

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

The CCP4 suite: programs for protein crystallography

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Rational protein crystallization by mutational surface engineering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Application of 3D-Jury, GRDB, and Verify3D in fold recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Structure of apo, unactivated insulin-like growth factor-1 receptor kinase at 1.5 Å resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

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Crystal structures of MTH1187 and its yeast ortholog YBL001c

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

3D-Jury: a simple approach to improve protein structure predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Current mechanistic understanding of thiamin diphosphate-dependent enzymatic reactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

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Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Substructure solution with SHELXD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

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A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

The ACT domain family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Automated protein model building combined with iterative structure refinement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Taking MAD to the extreme: ultrafast protein structure determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Miscellaneous algorithms for density modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Structure and control of pyridoxal phosphate dependent allosteric threonine deaminase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Protein structure comparison by alignment of distance matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

The allosteric ligand site in the Vmax-type cooperative enzyme phosphoglycerate dehydrogenase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Solvent content of protein crystals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

Stereochemistry of intermediates in thiamine catalysis. 2. Crystal structure of DL-2-(alpha-hydroxybenzyl)thiamine chloride hydrochloride trihydrate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2792028

26 November 2018

A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The amino group and steric factors in thiamin catalysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A thiamin diphosphate binding fold revealed by comparison of the crystal structures of transketolase, pyruvate oxidase and pyruvate decarboxylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Is a hydrophobic amino acid required to maintain the reactive V conformation of thiamin at the active center of thiamin diphosphate-requiring enzymes? Experimental and computational studies of isoleucine 415 of yeast pyruvate decarboxylase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15451668

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2004.08.037

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

PMC publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

21 June 2017

ResearchGate publication ID

0 references

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