(Q30463597)

12 August 2017

Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes (English)

1 reference

12 August 2017

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1 reference

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13

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Georgia Giannoukos

1

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Ashlee Earl

8

object named as

Ashlee M Earl

1 reference

12 August 2017

11

Chad Nusbaum

1 reference

12 August 2017

9

Dirk Gevers

1 reference

12 August 2017

Dawn M Ciulla

2

1 reference

12 August 2017

Katherine Huang

3

1 reference

12 August 2017

Brian J Haas

4

1 reference

12 August 2017

Jacques Izard

5

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12 August 2017

Joshua Z Levin

6

1 reference

12 August 2017

Jonathan Livny

7

1 reference

12 August 2017

Doyle V Ward

10

1 reference

12 August 2017

Bruce W Birren

12

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12 August 2017

1 January 2012

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12 August 2017

1 reference

12 August 2017

13

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12 August 2017

3

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12 August 2017

R23

1 reference

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq

12 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

RNA-Seq-based monitoring of infection-linked changes in Vibrio cholerae gene expression.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

High-throughput illumina strand-specific RNA sequencing library preparation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Gut microbiome-host interactions in health and disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Comprehensive comparative analysis of strand-specific RNA sequencing methods

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

The microbiota and allergies/asthma

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A catalog of reference genomes from the human microbiome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Dissecting the in vivo metabolic potential of two human gut acetogens

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Bacillus anthracis genome organization in light of whole transcriptome sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Molecular mechanisms of ethanol-induced pathogenesis revealed by RNA-sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A human gut microbial gene catalogue established by metagenomic sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

The primary transcriptome of the major human pathogen Helicobacter pylori

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Fast and accurate long-read alignment with Burrows-Wheeler transform

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A single-base resolution map of an archaeal transcriptome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Digital transcriptome profiling using selective hexamer priming for cDNA synthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Transcriptome analysis by strand-specific sequencing of complementary DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Structure and complexity of a bacterial transcriptome.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A core gut microbiome in obese and lean twins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Accurate whole human genome sequencing using reversible terminator chemistry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

A renaissance for the pioneering 16S rRNA gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Identification of new genes in Sinorhizobium meliloti using the Genome Sequencer FLX system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Microbial community gene expression in ocean surface waters

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Microbial influences in inflammatory bowel diseases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

RNAmmer: consistent and rapid annotation of ribosomal RNA genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

The RIN: an RNA integrity number for assigning integrity values to RNA measurements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Simple cDNA normalization using kamchatka crab duplex-specific nuclease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-3-R23

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-3-R23

A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FGB-2012-13-3-R23

Using MUMmer to identify similar regions in large sequence sets.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439974

26 November 2018

Identifiers

DOI

10.1186/GB-2012-13-3-R23

1 reference

Dimensions Publication ID

12 August 2017

0 references

1 reference

12 August 2017

PubMed publication ID

22455878

1 reference