(Q30481292)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

cryogenic electron microscopy

10 January 2020

main subject

0 references

author

Stephen A Wells

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

author name string

Craig C Jolley

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

Petra Fromme

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

M F Thorpe

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

language of work or name

English

0 references

publication date

9 November 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

number of pages

9

1 reference

inferred from page(s)

published in

Biophysical Journal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

volume

94

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

page(s)

1613-1621

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

cites work

The Monte Carlo method

1 reference

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GroEL-mediated protein folding: making the impossible, possible

20 June 2018

1 reference

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A natural coarse graining for simulating large biomolecular motion

20 June 2018

1 reference

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Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

20 June 2018

1 reference

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Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses

20 June 2018

1 reference

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Fitting of high-resolution structures into electron microscopy reconstruction images.

20 June 2018

1 reference

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Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase

20 June 2018

1 reference

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Normal mode based flexible fitting of high-resolution structure into low-resolution experimental data from cryo-EM.

20 June 2018

1 reference

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On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models

20 June 2018

1 reference

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Low-resolution structure refinement in electron microscopy.

20 June 2018

1 reference

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Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Structural basis for GroEL-assisted protein folding from the crystal structure of (GroEL-KMgATP)14 at 2.0A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Protein unfolding: rigidity lost

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

ATP-bound states of GroEL captured by cryo-electron microscopy

20 June 2018

1 reference

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Using situs for flexible and rigid-body fitting of multiresolution single-molecule data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Distinct cellular receptor interactions in poliovirus and rhinoviruses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Low resolution meets high: towards a resolution continuum from cells to atoms

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Knowledge-based protein secondary structure assignment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Electron-crystallographic refinement of the structure of bacteriorhodopsin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

The crystal structure of the bacterial chaperonin GroEL at 2.8 A

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Interpretation of electron density with stereographic roadmap projections

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Docking of photosystem I subunit C using a constrained geometric simulation.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Estimation of variance in single-particle reconstruction using the bootstrap technique.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Constrained geometric simulation of diffusive motion in proteins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Flexible multi-scale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Protein flexibility predictions using graph theory

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Fitting atomic models into electron-microscopy maps

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Building-block approach for determining low-frequency normal modes of macromolecules.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2242741

Generic rigidity percolation in two dimensions

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17993504

12 December 2020

inferred from PubMed ID database lookup

Identifying protein folding cores from the evolution of flexible regions during unfolding

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17993504

12 December 2020

inferred from PubMed ID database lookup

Generic rigidity percolation: The pebble game

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17993504

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1529/BIOPHYSJ.107.115949

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17993504%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

1 reference