(Q33781791)

29 July 2017

title

On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models (English)

1 reference

29 July 2017

1 reference

Marc Delarue

1

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29 July 2017

Philippe Dumas

series ordinal

2

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29 July 2017

language of work or name

English

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publication date

19 April 2004

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

published in

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29 July 2017

volume

101

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29 July 2017

issue

18

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29 July 2017

page(s)

6957-6962

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Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

29 July 2017

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A comparative study of motor-protein motions by using a simple elastic-network model

4 July 2018

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Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition.

4 July 2018

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Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

4 July 2018

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4 July 2018

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Small libraries of protein fragments model native protein structures accurately.

4 July 2018

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Normal mode analysis of macromolecular motions in a database framework: developing mode concentration as a useful classifying statistic

4 July 2018

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Exploring global distortions of biological macromolecules and assemblies from low-resolution structural information and elastic network theory.

4 July 2018

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Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

4 July 2018

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Dynamics of proteins in crystals: comparison of experiment with simple models

4 July 2018

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4 July 2018

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Domain movements in human fatty acid synthase by quantized elastic deformational model

4 July 2018

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The mechanism and pathway of pH induced swelling in cowpea chlorotic mottle virus

4 July 2018

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4 July 2018

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Anisotropy of fluctuation dynamics of proteins with an elastic network model

4 July 2018

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4 July 2018

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

4 July 2018

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Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential

4 July 2018

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Where freedom is given, liberties are taken

4 July 2018

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Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

4 July 2018

1 reference

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Normal modes as refinement parameters for the F-actin model

4 July 2018

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Harmonic dynamics of proteins: normal modes and fluctuations in bovine pancreatic trypsin inhibitor

4 July 2018

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Dynamics of a small globular protein in terms of low-frequency vibrational modes

4 July 2018

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Protein normal-mode dynamics: trypsin inhibitor, crambin, ribonuclease and lysozyme

4 July 2018

1 reference

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Refinement of protein dynamic structure: normal mode refinement

4 July 2018

1 reference

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Improved methods for building protein models in electron density maps and the location of errors in these models

4 July 2018

1 reference

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Analysis of domain motions by approximate normal mode calculations

4 July 2018

1 reference

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Functional motions can be extracted from on‐lattice construction of protein structures

21 January 2018

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Fitting atomic models into electron-microscopy maps

21 January 2018

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General formalism for phase combination and phase refinement: a statistical thermodynamics approach in reciprocal space.

21 January 2018

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Rapid comparison of protein structures

21 January 2018

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Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis

21 January 2018

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On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation

21 January 2018

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[7] Model phases: Probabilities and bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0400301101

[Model phases: probabilities and bias.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406448

Building-block approach for determining low-frequency normal modes of macromolecules.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406448

On the use of normal modes in thermal parameter refinement: theory and application to the bovine pancreatic trypsin inhibitor

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=406448

Reconstruction of low-resolution three-dimensional density maps from one-dimensional small-angle X-ray solution scattering data for biomolecules

30 October 2018

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https://api.crossref.org/works/10.1073%2FPNAS.0400301101

[33] AMoRe: An automated molecular replacement program package

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0400301101

21 January 2018

Identifiers

DOI

10.1073/PNAS.0400301101

1 reference

29 July 2017

0 references

1 reference

29 July 2017

1 reference