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Exon definition as a potential negative force against intron losses in evolution
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scholarly article
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stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
title
Exon definition as a potential negative force against intron losses in evolution
(English)
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
author
Deng-Ke Niu
object named as
Deng-Ke Niu
series ordinal
1
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publication date
13 November 2008
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
published in
Biology Direct
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stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
volume
3
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
page(s)
46
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
exact match
https://scigraph.springernature.com/pub.10.1186/1745-6150-3-46
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cites work
The Trichoplax genome and the nature of placozoans
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20 June 2018
Intron length increases oscillatory periods of gene expression in animal cells
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PubMed Central
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20 June 2018
Rapidly regulated genes are intron poor.
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PubMed Central
reference URL
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20 June 2018
Evidence against the energetic cost hypothesis for the short introns in highly expressed genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Pre-mRNA splicing: a complex picture in higher definition
1 reference
stated in
PubMed Central
reference URL
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retrieved
20 June 2018
Intron delays and transcriptional timing during development
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
Cross-kingdom patterns of alternative splicing and splice recognition
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression
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PubMed Central
reference URL
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20 June 2018
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach
1 reference
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PubMed Central
reference URL
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20 June 2018
Deletion of many yeast introns reveals a minority of genes that require splicing for function.
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20 June 2018
Investigation of loss and gain of introns in the compact genomes of pufferfishes (Fugu and Tetraodon).
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20 June 2018
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
Global control of aberrant splice-site activation by auxiliary splicing sequences: evidence for a gradient in exon and intron definition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Selection for the miniaturization of highly expressed genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Three distinct modes of intron dynamics in the evolution of eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Introns regulate the rate of unstable mRNA decay
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Protecting exons from deleterious R-loops: a potential advantage of having introns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Sequence features responsible for intron retention in human
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
A glimpse of a putative pre-intron phase of eukaryotic evolution
1 reference
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PubMed Central
reference URL
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20 June 2018
Relationship between mRNA stability and intron presence
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
Origins and evolution of spliceosomal introns
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?
1 reference
stated in
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reference URL
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20 June 2018
Intron-rich ancestors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
The evolution of spliceosomal introns: patterns, puzzles and progress
1 reference
stated in
PubMed Central
reference URL
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The excess of 5' introns in eukaryotic genomes
1 reference
stated in
PubMed Central
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20 June 2018
Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii
1 reference
stated in
PubMed Central
reference URL
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20 June 2018
The biology of intron gain and loss.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
The architecture of pre-mRNAs affects mechanisms of splice-site pairing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Analysis of evolution of exon-intron structure of eukaryotic genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
mRNA-mediated intron losses: evidence from extraordinarily large exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Complex early genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Complex spliceosomal organization ancestral to extant eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
The pattern of intron loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
How did alternative splicing evolve?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Selective and mutational patterns associated with gene expression in humans: influences on synonymous composition and intron presence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Introns in gene evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Eukaryotic intron loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Messenger RNA surveillance and the evolutionary proliferation of introns
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Initial sequencing and comparative analysis of the mouse genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Selection for short introns in highly expressed genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Selection and gene duplication: a view from the genome
1 reference
stated in
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Initial sequencing and analysis of the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
Architectural limits on split genes
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
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20 June 2018
A role for reverse transcripts in gene conversion
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Exon recognition in vertebrate splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Exon definition may facilitate splice site selection in RNAs with multiple exons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
RNA-mediated recombination in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
20 June 2018
Widespread intron loss suggests retrotransposon activity in ancient apicomplexans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
26 November 2018
Characterization of intron loss events in mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
26 November 2018
Evidence that human genes of modular proteins have retained significantly more ancestral introns than their fly or worm orthologues
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
26 November 2018
Why do genes have introns? Recombination might add a new piece to the puzzle.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2614967
retrieved
26 November 2018
Pseudogenes in yeast?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19014515
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Investigating the intron recognition mechanism in eukaryotes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19014515
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
SR proteins: a foot on the exon before the transition from intron to exon definition
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19014515
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Human antisense genes have unusually short introns: evidence for selection for rapid transcription
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19014515
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1745-6150-3-46
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
Dimensions Publication ID
1051417007
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Fatcat ID
release_2c4nwfqvpbfjxlx6ml4fzk7zee
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Fatcat
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https://api.fatcat.wiki/v0/release/2c4nwfqvpbfjxlx6ml4fzk7zee
retrieved
24 November 2022
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mapped directly with Wikidata item
PMCID
2614967
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
PubMed ID
19014515
1 reference
stated in
Europe PubMed Central
PMCID
2614967
retrieved
17 August 2017
ResearchGate publication ID
23478771
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