(Q30496032)

English

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection

scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection (English)

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

European seabass

1 reference

based on heuristic

inferred from title

David W. Ritchie

4

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Serena Ferraresso

1

object named as

Serena Ferraresso

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

object named as

Massimo Milan

3

0 references

Richard Reinhardt

object named as

Richard Reinhardt

6

0 references

2

object named as

Heiner Kuhl

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

author name string

Christopher J Secombes

5

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Luca Bargelloni

7

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

language of work or name

0 references

publication date

19 November 2009

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

61

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

11-12

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

773-788

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

https://scigraph.springernature.com/pub.10.1007/s00251-009-0398-3

0 references

Adaptive evolution of young gene duplicates in mammals.

1 reference

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20 June 2018

Reliabilities of identifying positive selection by the branch-site and the site-prediction methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Rainbow trout (Oncorhynchus mykiss) possess multiple novel immunoglobulin-like transcripts containing either an ITAM or ITIMs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Investigating protein-coding sequence evolution with probabilistic codon substitution models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Form, function and phylogenetics of NITRs in bony fish.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

A Bony Fish Immunological Receptor of the NITR Multigene Family Mediates Allogeneic Recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Patterns of positive selection in six Mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Evidence for a transposition event in a second NITR gene cluster in zebrafish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

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Speed and selection in the evolution of killer-cell immunoglobulin-like receptors.

1 reference

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Sequence similarity searching using the BLAST family of programs

1 reference

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The zebrafish activating immune receptor Nitr9 signals via Dap12.

1 reference

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20 June 2018

Structural characteristics of zebrafish orthologs of adaptor molecules that associate with transmembrane immune receptors.

1 reference

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The birth of new exons: mechanisms and evolutionary consequences

1 reference

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1 reference

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Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach

1 reference

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Characterization of additional novel immune type receptors in channel catfish, Ictalurus punctatus.

1 reference

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PAML 4: phylogenetic analysis by maximum likelihood

1 reference

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A novel immune-type receptor of Japanese flounder (Paralichthys olivaceus) is expressed in both T and B lymphocytes

1 reference

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Mhc class I genes of the cichlid fish Oreochromis niloticus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Concerted and birth-and-death evolution of multigene families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Natural selection on protein-coding genes in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Not so different after all: a comparison of methods for detecting amino acid sites under selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Novel immunoglobulin-like transcripts in teleost fish encode polymorphic receptors with cytoplasmic ITAM or ITIM and a new structural Ig domain similar to the natural cytotoxicity receptor NKp44.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

Bayes empirical bayes inference of amino acid sites under positive selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

20 June 2018

ProtTest: selection of best-fit models of protein evolution

1 reference

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Resolution of the novel immune-type receptor gene cluster in zebrafish

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2921055

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RETRACTED: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics

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Domain shuffling has been the main mechanism forming new hominoid killer cell Ig-like receptors

1 reference

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MatGAT: an application that generates similarity/identity matrices using protein or DNA sequences

1 reference

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Immune functions encoded by the natural killer gene complex

1 reference

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Apollo: a sequence annotation editor

1 reference

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IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains

1 reference

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20 June 2018

Extraordinary variation in a diversified family of immune-type receptor genes

1 reference

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Comparison of chimpanzee and human leukocyte Ig-like receptor genes reveals framework and rapidly evolving genes

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The immune system of sea bass, Dicentrarchus labrax, reared in aquaculture.

1 reference

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Novel immune-type receptor genes

1 reference

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Immune-type receptor genes in zebrafish share genetic and functional properties with genes encoded by the mammalian leukocyte receptor cluster.

1 reference

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Early signaling via inhibitory and activating NK receptors

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1 reference

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The genomic organization and evolution of the natural killer immunoglobulin-like receptor (KIR) gene cluster

1 reference

https://pubmed.ncbi.nlm.nih.gov/19851764

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A novel immunoglobulin-like transcript from rainbow trout with two Ig-like domains and two isoforms

1 reference

https://pubmed.ncbi.nlm.nih.gov/19851764

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00251-009-0398-3

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 October 2017

ResearchGate publication ID

0 references

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