(Q30497473)

English

On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations (English)

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

1 reference

based on heuristic

inferred from title

author name string

Ajanthah Sangaralingam

1

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

Edward Susko

2

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

David Bryant

3

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

Matthew Spencer

4

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

9 November 2010

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

10

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

343

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

Recovering evolutionary trees under a more realistic model of sequence evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

The tree of genomes: an empirical comparison of genome-phylogeny reconstruction methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

A likelihood framework to analyse phyletic patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Uncovering rate variation of lateral gene transfer during bacterial genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Dendroscope: An interactive viewer for large phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Genomics and the irreducible nature of eukaryote cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

On conditioned reconstruction, gene content data, and the recovery of fusion genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

CoGenT++: an extensive and extensible data environment for computational genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Genome trees and the nature of genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Does the ‘Ring of Life’ ring true?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Phylogenomics and the reconstruction of the tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Genome reduction in prokaryotic obligatory intracellular parasites of humans: a comparative analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

The ring of life provides evidence for a genome fusion origin of eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Computational inference of scenarios for alpha-proteobacterial genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Protein families and TRIBES in genome sequence space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Prokaryotic evolution in light of gene transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

An efficient algorithm for large-scale detection of protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Genome trees constructed using five different approaches suggest new major bacterial clades

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Deletional bias and the evolution of bacterial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

A genomic perspective on protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

20 June 2018

A phylogenetic mixture model for gene family loss in parasitic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

Reconstruction of highly heterogeneous gene-content evolution across the three domains of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

The origin of eukaryotes: a reappraisal.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

Conditioned genome reconstruction: how to avoid choosing the conditioning genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

Patterns of bacterial gene movement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

Deriving the genomic tree of life in the presence of horizontal gene transfer: conditioned reconstruction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2992526

26 November 2018

On the desirability of models for inferring genome phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/21062453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Likelihood, parsimony, and heterogeneous evolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/21062453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene family content-based phylogeny of prokaryotes: the effect of criteria for inferring homology

1 reference

https://pubmed.ncbi.nlm.nih.gov/21062453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

SHOT: a web server for the construction of genome phylogenies

1 reference

https://pubmed.ncbi.nlm.nih.gov/21062453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New methods ring changes for the tree of life

1 reference

https://pubmed.ncbi.nlm.nih.gov/21062453

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2148-10-343

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

1 October 2017

ResearchGate publication ID

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