Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q30503882)
Watch
English
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context.
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
title
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
main subject
visualization
1 reference
based on heuristic
inferred from title
web server
1 reference
based on heuristic
inferred from title
author
Malte Mader
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
Ronald Simon
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
Sascha Steinbiss
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
author name string
Stefan Kurtz
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
publication date
28 July 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
published in
Journal of clinical bioinformatics
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
volume
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
page(s)
20
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
describes a project that uses
limma
object named as
R package limma
1 reference
stated in
CZ Software Mentions: A large dataset of software mentions in the biomedical literature
exact match
https://scigraph.springernature.com/pub.10.1186/2043-9113-1-20
0 references
cites work
Integrative genomics viewer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
NCBI GEO: archive for functional genomics data sets--10 years on
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Ongoing and future developments at the Universal Protein Resource
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Ensembl 2011
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Integrative genomic profiling of human prostate cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
SEURAT: visual analytics for the integrated analysis of microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
waviCGH: a web application for the analysis and visualization of genomic copy number alterations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
CHESS (CgHExpreSS): a comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Genoviz Software Development Kit: Java tool kit for building genomics visualization applications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
SnoopCGH: software for visualizing comparative genomic hybridization data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
JBrowse: a next-generation genome browser
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
UTGB toolkit for personalized genome browsers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
A flexible rank-based framework for detecting copy number aberrations from array data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
AnnotationSketch: a genome annotation drawing library
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
SIGMA2: a system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
A fast and flexible method for the segmentation of aCGH data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
SIGMA: a system for integrative genomic microarray analysis of cancer genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Visualization of genomic aberrations using Affymetrix SNP arrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
TM4 microarray software suite
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
CAPweb: a bioinformatics CGH array Analysis Platform
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Visualization-based discovery and analysis of genomic aberrations in microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
CGHPRO -- a comprehensive data analysis tool for array CGH.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Denoising array-based comparative genomic hybridization data using wavelets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
ArrayCyGHt: a web application for analysis and visualization of array-CGH data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
The Stanford Microarray Database accommodates additional microarray platforms and data formats
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
CGH-Explorer: a program for analysis of array-CGH data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Caryoscope: an Open Source Java application for viewing microarray data in a genomic context
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Circular binary segmentation for the analysis of array-based DNA copy number data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Accurate detection of aneuploidies in array CGH and gene expression microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
The Ensembl Web site: mechanics of a genome browser
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
A census of human cancer genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Normalization of cDNA microarray data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Microarray data normalization and transformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
The generic genome browser: a building block for a model organism system database
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
The human genome browser at UCSC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Gains, losses, and amplifications of genomic materials in primary gastric cancers analyzed by comparative genomic hybridization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
20 June 2018
Frequent inactivation of PTEN/MMAC1 in primary prostate cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3164613
retrieved
26 November 2018
Identifiers
DOI
10.1186/2043-9113-1-20
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
DBLP publication ID
journals/jclinbioinf/MaderSSK11
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1003869340
0 references
Fatcat ID
release_vjmj5wf6gba2vap3vpmce567t4
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/vjmj5wf6gba2vap3vpmce567t4
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMC publication ID
3164613
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
PubMed publication ID
21884636
1 reference
stated in
Europe PubMed Central
PMC publication ID
3164613
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21884636%20AND%20SRC:MED&resulttype=core&format=json
retrieved
12 February 2020
ResearchGate publication ID
51612916
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
